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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1795760 |
| Transcript ID | Lj5g3v1795760.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pseudouridine synthase family protein isoform 2, partial [Theobroma cacao] gi|508726877|gb|EOY18774.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | – | – | |
| Phobius | 1 | 23 | 23 | – | – | |
| SignalP | 1 | 23 | 23 | – | – | |
| Phobius | 11 | 18 | 8 | – | – | |
| Phobius | 19 | 23 | 5 | – | – | |
| Phobius | 24 | 352 | 329 | – | – | |
| PANTHER | 44 | 350 | 307 | 1.80E-166 | – | |
| PANTHER | 44 | 350 | 307 | 1.80E-166 | – | |
| MobiDBLite | 49 | 77 | 29 | – | – | |
| MobiDBLite | 110 | 153 | 44 | – | – | |
| SUPERFAMILY | 122 | 249 | 128 | 1.70E-18 | – | |
| Gene3D | 167 | 229 | 63 | 1.20E-20 | ||
| Pfam | 168 | 210 | 43 | 4.40E-11 | ||
| SMART | 168 | 227 | 60 | 6.90E-12 | ||
| ProSiteProfiles | 168 | 237 | 70 | 14.045 | ||
| CDD | 168 | 235 | 68 | 6.37E-11 | – | |
| SUPERFAMILY | 230 | 340 | 111 | 1.47E-20 | ||
| Pfam | 231 | 323 | 93 | 6.90E-14 | ||
| ProSitePatterns | 279 | 293 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. | ||
| Molecular function | Intramolecular transferase activity | Catalysis of the transfer of a functional group from one position to another within a single molecule. |
Expression pattern of Lj5g3v1795760.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1795760.1, powered by CORGI.
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