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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0270600 |
| Transcript ID | LotjaGi5g1v0270600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal large subunit pseudouridine synthase B; TAIR: AT2G39140.1 pseudouridine synthase family protein; Swiss-Prot: sp|P35159|RLUB_BACSU Ribosomal large subunit pseudouridine synthase B; TrEMBL-Plants: tr|A0A151SE04|A0A151SE04_CAJCA Ribosomal large subunit pseudouridine synthase B; Found in the gene: LotjaGi5g1v0270600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58383104..58393597) extracted from Lotus japonicus Gifu genome v1.2.
GTTAAATTCTATTTAGATAATTGTTTTACAATGCAAGTGCAAACTTGTTTGATTCTCCCCCGAAGAAGAAATGGTTGCTG CGTCGTCAACAATGGCGATGACGGCACTCTCTCTTCACTGCTTCACAAAGTCACACTCTCACTCCCTCACTGCTTCATTC CGCACTCTCCCTCGTCTCACATGCTCCTTCTCTTCTTCCTCCTCAAAGTTCAACATCTCCTTCGCTCCCTCCAAACCCAA ACCCAAACCCAAACCCGAACCCGATAACGACGACGCCGGCCAGCTTCTGATCCCATGGATCGTCCGGGGCGAGGACGGAA ACTTCAAGCTGCAATCCGAACCTCCGCCGAGTTTCCTCAGAGCCATGGCCACCGCCCAAACCGGCACCAAAAAGGAGAAC AAGAAGAGCCAAACGACACCAACAGCAAAGAAGAAGAAGAGTGAGAAGGAGGATAATGCTCGTACGGTGTCGTCGTCGCC GCCGCCGAAGTATTCTAAGGCGGCACGGCGGTTCTACAACGAGAATTTCAAGGACTCCGCCGGTGAACGTCTCAGCAAGG TCCTCGCCGCCTCCGGAGGTGAATTTCTGTTACTAGTTTGTTTTGACAGTTACAAATTCAGTTGAGAATTATAACTAACT AACTAACAAAACGGTTTTCTGTTGTTTGTTTGTTTTTTCAGTTGCTTCCAGGAGAAGCTGTGAAGAGCTTATTTTTGAAG GGAAGGTTACTGTTAATGGTTCTGTTTGTAATACTCCTCAGGTTTGTTTGATTTCTTCATTCATCATATCATGAATTGTA GCTTTTAGGTCCTGTTTCTTGTGTAAGGTTAAATAGTGGAAAGTAATTTATGAGAAAAGCACTTTTGTGGTGGTGTGCAA TGCAGACTAAAGTGGATCCTGCAAAGGATAGTATCTATGTGAATGGGAACCGTCTCCCGAAGAGGCAGCCGAGAAAGGTT TATCTTGCATTGAACAAGCCAAAAGGGTATGCAAGTGTGTGTTTTCGTGTTGTTGCACATGTGGCTGCTTATGTAAATGA GTTTATAATTGAGTTTGTTCTTTTCTCATGCGTTCTTGTGCGTGATGCTATTGTGTTTCGACAGGTACATATGCTCGTCT GGGGAGAATGAACCTAAATCTGTCATGATTCTATTTGATGATTATTTGAAGAGTTGGGTATGTAGCACTTTGAATTGGCA GCGTTATGATTGTGTTGTGTTCTTTATTGATTCTGCAATATGTGTTTCTTATCAGTTATGTGAAGGCATTTTAGTTCCAT CTCTTTTGGGATATAGTTCAATATTTCTTTAAACTTACAATGATGTTTCTCTATCACCTAAAAACAATTCTATCTCCAGG GTAAAAACCATCCGGGAATACCCACACCACGGCTATTTACTGTAGGGCGCCTTGATGTTGCTACTACTGGATTAATTATT GTGACTAATGATGGTATGCGGTTTCACGTGAAAGCAATTTAATCTCCATTGAATTAATTTTTAATAGTGGTTCTATACTT CTCCTGATAAATTATGTCTCAGCAGTTTCATCTAATACTTAATACAATGATGCTTGTTCACAGGAGATTTTGCTCAAAAG CTTTCACATCCATCATCTAATTTATCCAAAGAGTGAGTCAGTTGAGCCTGATTTGTGTATTTTTATTGTTTATTTCCTTC ATTAGTTTGGGTTGATATTGCAACTATAGGAATGGAAAGAGTACTACTCGCAAGGTTCTTGTTGGGTACTAGTTTGGTTC AAATAATTTAGATGCTGCTGTGTGTTTCTTAGTGCTTTACTGCATGAAATGAATGAAAATGATTGAATCTCCCTACCCTA TCCTAATTTAATGGTTTATCATGTGATTTGAGTTACATTTATTTAATGTATGGTTTATGTTATTTGCTTTTTCGCTCTTC CTATTATTGTTTCTGTGACGAAGAAAATCTTTCACTCCTATGAATGCTCACTTTCTTTGAAACACCACATTTGTGTTATA TCAGATACATCGCAGCAGTTGATGGTTCAGTTCATAAGAGGCACTTAATGGCCATAAGTGAGGGAACAGTCATTGAGGGC GTCCGTTGTGTTCCTGATATAGTGGAGTTACTTCCAAGTCAACCAGATATGCAAAGAGCTCGTCTTCGCATTGTGGTAAA TTTATCTGTTTTGATATGCTATATCAATTCTACTTCTTGCCAATACTGGTTGTGAACTTGTGATTGACTCATTCTGAGAT GTTGACATGGTATCTCACTTGAGCTACAATCTCATGGTGCATAATTTCCTTTTTACTGCAAATTTTAGTGTTGTAGACTA GGACATACCCTACACATGTAAAACTACTTTGGGTAAATTGTAGTAAATTCCTGCACACTTGATTGTACCTCTCTTATAAG AAATTCTGATTTTCTTTGACTGGCATCATAGGTTGAAAATTGAATTGTTTTAATAGCTTTATAATGTTGAGAAATTTAAT TTTCACACATCTCAACAAAGCTTTAAGCAAAGGAACTCTCAGATGGGTGACATTGGTATATTAATGACAAATCCTGTTTT ACACTTTGTTTCTCAATTTTCAATCTTTATTCTTCATGTTCAACACATATGGTATTGTTGTTTAAGAAATTTTTGTGACC ATTAATGTAATATTGTGCTTGACTGCTTGTCACATGGGAGTATTGGTTTTGATTTAAGTAAGTATATGCAATTTTGACAT CCTCATTAGTCACTATCTCAAGATGGCTTCATTTTAGTTTGTCAAATATATCTATCTACGTCTTAGAGCATTTAACCTAT CAGTTATGAAGAAAATCGAACCTAGTTGGAAATTTCTTGTTTCATTTAATTTGGATTCTTGTAGGTTCATGATGGGAGGA AACATGAAGTTCGTGAGCTTGTGAAACGTGCCGGACTCGAGGTTAGCTTCAATTATACATATGCTCCATTTAATGTCCCT CAAAAGCCAAACGTACTAGTGCTTAGGCATATAAAATTTAGTGAATAACTTATATACATGTTTTTTTTGTTTTCATGACT CATTAGAGTATTGTCCACCGCTGTTGTATTTTACAAGACCTTGCTTTATGTTAAATCAATCCATCAGAAAAATTTAATCA GCTTAAACTTTTCTGGTGTTACATTGATTACTTATCTCCCAAACTTGGGTGTCTGCTTGTGCTGTTAACTTCTTTGTGGG TTTCAACTTATGGGTATTTTAGTTTTAGACACGATTGACAATACTTCATCTCGTCCTATTAGTGAGGATGTGCAATACTG GTTCTGATTTAAGCGATGATATGCAATATTGACATCCTCACTAATCATTATCACATTATATTTATCATTATGGCTACATT TGATCCATGTAGACGATTCCATGAAAAAGGATTTAGTTTCTGTTTTTTCTGTTCCCTTTATACTATATTAATAACATGCT GAAGTCTATTATTTTTCTCCTTCAGTTAAATGACTAACTGTACCTACATTGATATCTTATTTCTGTTTCATATTTCAGAT TTATTCATTAAAGCGGGTACGCATCGGTGGTTTTAAACTTCCACCAGACCTTGGGTAATTTTCATGCATTTAAGTTACTG TAGTTCTTGGGGGAGTCCTTTATTAGTCAAATATTATTCTAGTGACATTTCATTTGAATTCGGTAGTTAGATGAGTAGTA GTAATACAATTCCAGTAATGTTTCAATTTAATTCTCCGGTGGTAGTCAAATTCAGTTTTCCAGTAAAATTTCAATTGATT TCTCTGGCAGTTAAGGGAATTAATACGTTTTCAACTGTTGTATTTTCAGGATAGGGAAGTATCTTGAGCTAAATCCAACG CATCTGAACGCCTTGGGGTGGAAGAGTCAACCAACTTAATTGTTTGAGTTATAAAGAGTCAACCAGATTAATACAGCTCT GAAGCTGTTATGAAAAGAGTTGGCCAAGGCTTGATTGGTCTGAGCTGTTAGATACTTGCTGCATTTCTTGGGAGAGTTTT TGGGATAGTGCCAGAGCACACTGCTCTTTTGACATCAAGCCAATCTTGATGCTCTCAGCAATCTAATATATATGCTCTCT GGAGTATTTAACATCTTCCTTATGGAAGATTTCCCCAATTGTACAAGTATTTGGAGGAACCTTATGCAAGTGAAGGTGTG GAGGGCGTAATACCTCTCATGTGGTATATACCATGTAAGGTTGACAATTGGATAACTTAAATCAATGATTAAGATGTTTT AGTGCTTGTTTGTTTATGCGCTGGCGGCCTTTAAATCAATTTTCTTTAAATCAATTTTCACGGCTTCCGTATACATGTAA CAAAGAAGAAAGTATAATTTTGGATTGGATTAAATGCGCTTTCACATTACACCGAATGTTTTCCCAAGCACACCCTTATT GGTTGAATTGGTCAGCTATAATAATGTACAAAATATTGGGTTAGTAGGGAACAAATGAAGGTTTGAATTTGGGGATCAAG GGTTTTCAGATAGACTAGAGCTGTGGAGCATAAATAAGAGGTTCACTATGCTTTTGCTTTCGAATCGGAAATCAAAACGC AAATACGCAATAACGTGCCAGGCCTCACAGTACAGTGCAATTCGAATTAATTAACCTAATTGTAAGTGAAAACTGGTTCA GTTAAAGAATTGATTCTTAAAATGCCGTTTGCGAACCACATTATCTTGTTCATGTTTTTAAAATTTCGGTCAATTAAGCT AATCATTCAAAAAAAATTAAGTGGAGCGATTGATTACTTTCTCACTTTCACTGCAGAGAAACTGTAGCTTGTAAAACTGA CAAGATACTGCAACAACTACGAGTCCTAAAAAAATAATCACGAGCACATTGCCGGGACAAATTTCGAATTATTTACTAAA ATAGGCCACACATTTGTAGAAAGGTAATTATACAATATCTTTAGCAAGAAAAATATACAAGTGACTATCAGATTGTTGGT AACATTAACGTGAATTCAATTTCTCATCACACAACTTAAACCCAAAAATTGAGACCGAGAGAGCGAGAAAGCCCAAAAGG AAAGCAGCAGCAACCAAAATTGACATCACATTATAAATTACAATTTACAAACAAATGAGGGGGAAAATGGAACTGCTATC AAGGGCAAAATCAAAAATCACCTTCTAACTTGTAGTATAGTCAGTTGTAATTTCGCGTAAAATAGGCGATCTGCATCGGC TAGTTGCATTAGCATTTTTCAGAATTAAGGATCAGAAACCTAATTGATGCGATCACCCCAACGTTCCCAAAAAGACTCCA GAACACAAGTGAATGAACAGACTACAAGGATAATATTTCAGATACTCGATCCTGTCCATCAGGAGGAATCTCCCTTCCAG GGACCTGAACATTAAGAAGGTTGGCGTACCTGTGGAAATAATTGTCAATATAAGTCCATAGAAGCGTATTAACAACAAAA ATTCCTATCAACTTACTCTATAGCAGTAAACAAGTGAACATGTTCTGTAATGAACGCGACCAGGGCCTGCGACAGGAATA AGAATGCAAAAGTTAGACGGCTTGATTAAAAATTAAATAAACATGAAGTCATCAGTTCAGTAGACTCACCTCAAATGGCA TGTTTAGTAGTTCATAGTAGGTGCGGACTCGATCCAGTCTTTGTTGCACTGCTTCGCTATCTATGGATGGAATCGCTGCA AGTGCCTGTAAAACCATCCAAAATTATTATGAATGTCAAATTTCGTTGGCTGCTTTCTAACACACACCCACACAGTGACA AACAGTCAAACACATACACAAAGTCACGCACACACTGCAAGAGCAACAACAATTACCTGTTCCAATGCGATTGAGTTTCG ACATATTTGTTGAACACCAAAGAGATTAATAGACTTCATATCTGCCAAAGCCTATAAAGAAGTATGGGCGGTTAAGAGAC TAACTAAAGAACTCCAAACACAAACATGCAAAGTTTAAAAAAAAAAACTACAGAAGTATACACATTCACACCTTAATTGA TGCATTTGCTGCAACCCCACAAATTCCACCATATATGTAATTCCGCTTTGAATTTGAAATAAAAGGAGCCATTTCCTCAT CTCTTCGTGTTATCTGGAGGTTCCATTGAAAAAGATGAATAATTTGGCTTGCATAAGGTAAAAGCACAACCTTAATCTTT GAGTCACTAACGAAGAAGATCAAACTTCATGAAATTCATCAGGATATTGCAGTTATTGAGGGTTACTTTAGAAATTGCAG TTGATAGTATAGTAATATTACATAGTCATCACTAAATTAAATAATTTAGAACTTATCTAGTAAGATCCTATTATTTTGTA ATATAACAGTATATTCGTGCAAGAAAAAAACTGTTTGAAGTTTGTACATGTTTTTCAAAGCTGAAAGACCTGTGACTTGA AAATTAAAAACAGAAACAGAAACAGGAAACATCTCTAAGATGTTTTGGGATTTCAGTTTTTAAAATAAGAACTGTTTTTA ATAACAGTCTTTGAAAATTGTTCATACCAAACGAGTTAAATTTCTTCTTCTGTTGTAAAAACAAAAAGCTGTTTCACAAA ATAGTAATCAAACCGGACCTTATTCTCCCAAAACCATAGTTTCTTTTCTCGACACTGGTTTACCCATGAGTAAAGTGCTC AGTGGTTAACAAAACACTAATTGAGTTAAACCATAAATCCTGAACATTGTTAAGTTTCCCCTGCTGGAAAATTTGTTGAC CAGGACATCATAAATTGAAATTATCCCTCAATTGCTAAATTCATCCTTGGAACCAACCAAGAATCTTCGTGAAGACATTA ACATGCAAAAATATAAGGACAAACCTGTGAAGTGAGCGAAATGATGAAGTCGTCTGGTTCTTCAGCATCTTGATCATCCA AGTATTCTGTATTTGTCATTTCCTGCTCAAAGTTGTGAGGCTCAGATAAGTTCAGAGACAAACTATTATCAAATTCTTAC TCCTACAACTAGAGGAAAATAACATCATAAATGACAAACCTGCATATGAAATATTGTCTCCAACTGCATCTCTACACGTA AAACCTTGAGGCAATCGATTGCCAATTTCCTATAATCTTGAGCAAAAGATCCTAGACTCCTTGCAGGCGCACCGTCTGAA TGACTATGGTATTTTCCTTCCACATGATTTGATGCTCTTTGAGTTGTTTGTCCAAGCCTGCCAAATACACAATAATTTAT TACGCTCAATTTCTTTCATTTATGAAACCAATAAAACAAACCCAACACCACATCACTCTCTAAGGAAAGATAATGGTATC TATGCTGAATATATCATCACTGATATCAGTGGGATATCAGTACTAGTAACATAGATTTACAAGAGGAAATGCACAACAAA AACTAAGTCAACTTAGTTTACAATCTAGGACTATGACAGCAGAAGCAGCTCAGCGACCAAACTCAAACGCAAGCCAGCAC CCACTCTTACAGACAGTTCACACAAACCTTGGAGACATTGTCGCACCAAACCAGAGGTACACAGGTCCAAAGTCAAACAT AAGCCTGGAGCCAGTCGCACCCAAATGAAACATTAACTGAAGAAGAGTACAGACCAGTTGCACCCAAGGGAAGCTCTCAC AAATGGTGACCCCTCCCCTCCTTAAAAAGAGGGAAAGGTAAAGAGTGGCCTATTACGCCACCAAAAATGAAGGCTTATGT ATGATTCGTGATATCACAAATTCTACTGATCTAACTCAAATCCCAGAAAAATAAGTTCGTATCCAGGGATGGGATTGTTA CCCCAACAAGACCTTGAAGTCGTGGAATCTATAATTTCAACTAAAATTATGGCAGTCTTGAAGATATACTTGCTTTATAC ACAGTATGCACAAATTAGCGTTGCTAGATTCACAGCATTTAGAAAACCCACCTTTCAATAGAGTCAGCAACATACTCCAA TGAGTCACTAAGGGACGCCAACAAAATAAGTTTATTGTCATCATGGATTAGGTTTTCCTGAAGCAAAAATACAATCAAGT CACTAGAGAGGCATAATAAATAGGAAGACCCGGGGGGGGGGGGGATTTTTAGCAAGAATGCATAACACAGATAATCTAAT TCTTATATGACTCACAAAAGAAGAATAGTAGCTTGTTAGAATAACAAAGAAATAAAAACCTGCTTAATAGGACGCAAACT TAGCAGTAATTCACTTAGCTCTGATTCAGCCTCAATTGTTTCAGCATCAGAGGAATTACTTTCCATGTTAATATGACCGA GCAGGTTTGGTAAATATGCACTTGAGGGGTCAATCCTCATCAATTTCTCAATATCATGCCTCCCAATAAGCATGTAACTC TGCTTTTCAAGAACAGCCTGGAATGTAATTGAAAAAAGTGTAAGAAAATAGTAAAAGTTGAAGGTTTCTGTGCAAAAAAT TCTTTATAAGGATGTCAACCACCAACACATCTAGATTCTCAAAGGGATAATGAACAGGCCCATTTGTACTTTGTGCTGAT ATTTAATTTAACTAACAAAGAATCGGTGTGCAACAAGGATCAGCCTCCTGACCACTTGAACATCAAATTGTGTTCTTTCC TTCTTTACAGTGCTCAGCCAGAGGTTCTTTAAACGAGTAACTTTGTCTGGTTCCCTGAGGATCTGGCTATCTCTTTTATG ATTCTGCCATTTTTTGTGACTATGTGCTCTGTTTTTCTCTTCATGGTTGTTGTGCAGTTTCCTTTCATTCTAATGAAAGC TTTTATCCCATAAAACTAAAACAGAAAAAATATACCTCCATGTATGAAGTCCGGCATCTTTCGTAAGTCCTCTCCAGAAA AGTTTGCACATACTTCACAAGATCATTAGCAAATTTGGGCATTGCTTGTGCCCAGCCAAGTACCTGCAAAACATTATAAT TAGTAGGGGAAAGTGGAAACATCTAGTCAATAAAATAATGTCCAAACCCAGAAACTTATTAATCCAGGTTTAGTCATCTT GTGTTAAATATAGAAGAACATATTACAAGGTAGAACATTATCATATTAAGAGTATTATAAAAAGTTTACCTCCTTTGTCA AGTAATCTATAGCCAGTAATCCTTGCAATACAGGTCGACCCTTCTCAATTGACGGAGTGTAAGCAGTAACCACATGTGCC CTTGGACGAAATGCAGCAGGGCCTAAAAGTTTATATGCAGAGATCAAATCTTAGAACAAGCTTATGATGTAACCATCTGA AGAAAAATACTAATCTCTCAATCAGTCATAAAAAATCATTTCCATTTTCTAATATATAAGAAGTACCACTGTTTAGTAAT TTTATTTTATTCAATCCATTAGATGCCTATAAACGTAGTAAGATGCACTATTTTATTCAGTTAGCTTTTAAGTTTCAGAT TGTAAGGTACTGAAACTTCTAAAATCAAATTCGCAGCAGCATGTGACAGCAATTAAAGTTTAGCAACTTATCTATACCTT GATATTACTGACAAATTAGGGAAAACTAATAAAGAACCAATTTATGTTTTTTGTCCAACAAAAAGAAGGGATATATGAAC ACTTGATTAACCTTTCTATGAGAAGTTTAACCATTCCTTTTTTGGAAGAAAAAATTGCATACTGACTCTTTATTTCAAAT TCCCAACAAATTAACATGTATTAGCAAGTCTGCACTTACAAGAATATAAACACTATGCATATGCACAAGTCAAACAGTTA AAACCCTCTAAAAACACAGAAATGCATATTCCAGTTTTTGTGGCTTTTTGAATTCAACTGCATTAGGAAAGGATAATCTA GTAAGGGAACAAGTCTTCAGCAACTGAAGCCAAGAACTATGGTGGGAACAACTTTGAACTTACTTAACTTCCATCCATCT TTTGTGAAATCCCAATGTTTAAATTTTAAACTAGGACTAAGAAATTTCATGTAAACCAAATTCTCTTCATGCATTTATTT ATTATGTTTTGGGCTGGATGTAATGTATTTATTACCCATGTAATTTTCAATTAGACCTTCGACTAAGAACGAGTTCTTAC ATCAAACATTTCAGACAAGCTAACTCCAAAATTCTTCAATGCATACATAATTGAAATACTCAGATGTTTCCCAAAAAAAT TAAGATGCACGAAAGACCACACTGCAAGCCAAGAAGGGCTTTAAGAAAAGAGATGCATAAAGAAAAAGTCAAAATAGTAG ACTTGCTTGATATAGCTTGTTGTACGCCTTTTCGGTAGTCCACAAACATAGTTGGTAAGAAATGGTCCTTCACGAAGTTC TCCACAAAAGCTAGCAACCCATCATTGCTGTAGTTCACAAAGTTGACAACACCATAAACTAACATTAATCGAGTTAGATC GCAACAAAACTTGAGCTTTAAAAGAAGTTTCACTATTTATGCAGAATCAATCAGCAAGAGCTTGTACAGAAAACAGATTC ATCACAACCATGTCAAAATGTACCAGAATCCACTTCATTTACTAATATTAAAAAAACACTATCTTAAAAAGTAGTTATAA TTTCTGTCTTTATC
CDS sequence (LotjaGi5g1v0270600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCTGCGTCGTCAACAATGGCGATGACGGCACTCTCTCTTCACTGCTTCACAAAGTCACACTCTCACTCCCTCAC TGCTTCATTCCGCACTCTCCCTCGTCTCACATGCTCCTTCTCTTCTTCCTCCTCAAAGTTCAACATCTCCTTCGCTCCCT CCAAACCCAAACCCAAACCCAAACCCGAACCCGATAACGACGACGCCGGCCAGCTTCTGATCCCATGGATCGTCCGGGGC GAGGACGGAAACTTCAAGCTGCAATCCGAACCTCCGCCGAGTTTCCTCAGAGCCATGGCCACCGCCCAAACCGGCACCAA AAAGGAGAACAAGAAGAGCCAAACGACACCAACAGCAAAGAAGAAGAAGAGTGAGAAGGAGGATAATGCTCGTACGGTGT CGTCGTCGCCGCCGCCGAAGTATTCTAAGGCGGCACGGCGGTTCTACAACGAGAATTTCAAGGACTCCGCCGGTGAACGT CTCAGCAAGGTCCTCGCCGCCTCCGGAGTTGCTTCCAGGAGAAGCTGTGAAGAGCTTATTTTTGAAGGGAAGGTTACTGT TAATGGTTCTGTTTGTAATACTCCTCAGACTAAAGTGGATCCTGCAAAGGATAGTATCTATGTGAATGGGAACCGTCTCC CGAAGAGGCAGCCGAGAAAGGTTTATCTTGCATTGAACAAGCCAAAAGGGTACATATGCTCGTCTGGGGAGAATGAACCT AAATCTGTCATGATTCTATTTGATGATTATTTGAAGAGTTGGGGTAAAAACCATCCGGGAATACCCACACCACGGCTATT TACTGTAGGGCGCCTTGATGTTGCTACTACTGGATTAATTATTGTGACTAATGATGGAGATTTTGCTCAAAAGCTTTCAC ATCCATCATCTAATTTATCCAAAGAATACATCGCAGCAGTTGATGGTTCAGTTCATAAGAGGCACTTAATGGCCATAAGT GAGGGAACAGTCATTGAGGGCGTCCGTTGTGTTCCTGATATAGTGGAGTTACTTCCAAGTCAACCAGATATGCAAAGAGC TCGTCTTCGCATTGTGGTTCATGATGGGAGGAAACATGAAGTTCGTGAGCTTGTGAAACGTGCCGGACTCGAGATTTATT CATTAAAGCGGGTACGCATCGGTGGTTTTAAACTTCCACCAGACCTTGGGATAGGGAAGTATCTTGAGCTAAATCCAACG CATCTGAACGCCTTGGGGTGGAAGAGTCAACCAACTTAA
Protein sequence (LotjaGi5g1v0270600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAASSTMAMTALSLHCFTKSHSHSLTASFRTLPRLTCSFSSSSSKFNISFAPSKPKPKPKPEPDNDDAGQLLIPWIVRG EDGNFKLQSEPPPSFLRAMATAQTGTKKENKKSQTTPTAKKKKSEKEDNARTVSSSPPPKYSKAARRFYNENFKDSAGER LSKVLAASGVASRRSCEELIFEGKVTVNGSVCNTPQTKVDPAKDSIYVNGNRLPKRQPRKVYLALNKPKGYICSSGENEP KSVMILFDDYLKSWGKNHPGIPTPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLSKEYIAAVDGSVHKRHLMAIS EGTVIEGVRCVPDIVELLPSQPDMQRARLRIVVHDGRKHEVRELVKRAGLEIYSLKRVRIGGFKLPPDLGIGKYLELNPT HLNALGWKSQPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 5 | 409 | 405 | 1.9E-187 | – | |
| Phobius | 11 | 18 | 8 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 412 | 389 | - | – | |
| MobiDBLite | 49 | 69 | 21 | - | – | |
| MobiDBLite | 101 | 144 | 44 | - | – | |
| MobiDBLite | 113 | 130 | 18 | - | – | |
| SUPERFAMILY | 115 | 240 | 126 | 2.62E-18 | – | |
| Gene3D | 154 | 216 | 63 | 1.3E-19 | ||
| SMART | 159 | 218 | 60 | 6.9E-12 | ||
| Pfam | 159 | 201 | 43 | 4.8E-11 | ||
| ProSiteProfiles | 159 | 228 | 70 | 14.045 | ||
| CDD | 159 | 226 | 68 | 1.77572E-10 | ||
| SUPERFAMILY | 220 | 402 | 183 | 4.48E-33 | ||
| Pfam | 222 | 363 | 142 | 2.7E-16 | ||
| Gene3D | 222 | 400 | 179 | 1.4E-42 | – | |
| ProSitePatterns | 270 | 284 | 15 | - | ||
| Gene3D | 299 | 384 | 86 | 1.4E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. | ||
| Molecular function | Intramolecular transferase activity | Catalysis of the transfer of a functional group from one position to another within a single molecule. |
Expression pattern of LotjaGi5g1v0270600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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