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IPR017956

Source: InterPro

Description

IPR017956 is a AT hook, DNA-binding motif.

<p>AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [[cite:PUB00044075]], in DNA-binding proteins from plants [[cite:PUB00044076]] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodelling complex [[cite:PUB00044077]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Associated Lotus transcripts 84

Transcript Name Description Predicted domains Domain count
Lj0g3v0055859.1
– AT DNA binding protein (Thy28) [Aspergillus niger CBS 513].88] gi|145257371|ref|XP_001401706.1|
Domains
8
Lj0g3v0062309.1
– Transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1|
Domains
12
Lj0g3v0062319.1
– Transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1|
Domains
4
Lj0g3v0073699.1
– Family 2 glycosyl transferase [Myxococcus stipitatus DSM 14675] gi|442322689|ref|YP_007362710.1|
Domains
8
Lj0g3v0093109.1
– Origin recognition complex subunit Orc4 [Schizosaccharomyces pombe 972h]-] gi|19112617|ref|NP_595825.1|
Domains
4
Lj0g3v0093109.2
– Uncharacterized protein isoform 1 [Theobroma cacao] gi|508709078|gb|EOY00975.1|
Domains
11
Lj0g3v0100699.1
– PHD finger family protein [Arabidopsis lyrata subsp]. lyrata] gi|297801176|ref|XP_002868472.1|
Domains
23
Lj0g3v0217419.1
– HMG-Y-related protein A [Medicago truncatula] gi|357460891|ref|XP_003600727.1|
Domains
17
Lj0g3v0236199.1
– PREDICTED: zinc finger protein 436-like [Cavia porcellus] gi|348570796|ref|XP_003471183.1|
Domains
3
Lj0g3v0259499.1
– Transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1|
Domains
6
Lj0g3v0259499.2
– Transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1|
Domains
6
Lj0g3v0267409.1
– HMGA2/WIF1 fusion protein [Homo sapiens] gi|125662765|gb|ABN50327.1|
Domains
4
Lj0g3v0302789.1
– AT hook motif DNA-binding family protein isoform 1 [Theobroma cacao] gi|508704093|gb|EOX95989.1|
Domains
15
Lj0g3v0310589.1
– Os07g0180800 [Oryza sativa Japonica Group] gi|297725433|ref|NP_001175080.1|
Domains
13
Lj0g3v0319459.1
– AT-hook protein [Medicago truncatula] gi|357476667|ref|XP_003608619.1|
Domains
11
Lj0g3v0351139.1
– Nitrite reductase [uncultured marine bacterium] gi|363586052|gb|AEW29026.1|
Domains
8
Lj0g3v0354859.1
– TashAT2 [Theileria annulata] gi|289597673|gb|ADD12272.1|
Domains
3
Lj0g3v0361069.1
– PREDICTED: HMG-Y-related protein A-like [Glycine max] gi|356539824|ref|XP_003538393.1|
Domains
3
Lj1g3v0606380.1
– Related to DNA ligase (ATP) [Claviceps purpurea 20].1] gi|399166869|emb|CCE32226.1|
Domains
4
Lj1g3v0725870.1
– ENBP1 [Medicago truncatula] gi|3492803|emb|CAA05489.1|
Domains
13
Lj1g3v0725880.1
– Lysine-specific demethylase 3B [Medicago truncatula] gi|357436481|ref|XP_003588516.1|
Domains
5
Lj1g3v2634040.1
– KLTH0F07568p [Lachancea thermotolerans] gi|255716500|ref|XP_002554531.1|
Domains
3
Lj1g3v2635090.1
– AT hook motif DNA-binding family protein isoform 1 [Theobroma cacao] gi|508704093|gb|EOX95989.1|
Domains
5
Lj1g3v2635100.1
– AT hook motif DNA-binding family protein isoform 1 [Theobroma cacao] gi|508704093|gb|EOX95989.1|
Domains
15
Lj1g3v3404290.1
– AT-hook protein 1 [Zea mays] gi|226532898|ref|NP_001149717.1|
Domains
16
Lj2g3v0677970.1
– HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1|
Domains
16
Lj2g3v1984960.1
– AT-hook protein [Medicago truncatula] gi|357476667|ref|XP_003608619.1|
Domains
11
Lj2g3v2560000.1
– High mobility group protein [Canavalia gladiata] gi|1181589|dbj|BAA11766.1|
Domains
17
Lj3g3v0718510.1
– PttB [Medicago truncatula] gi|357486205|ref|XP_003613390.1|
Domains
6
Lj3g3v1128980.1
– AT hook motif DNA-binding family protein isoform 1 [Theobroma cacao] gi|508704093|gb|EOX95989.1|
Domains
12
Lj4g3v1399600.1
– PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Maylandia zebra] gi|499027288|ref|XP_004564380.1|
Domains
3
Lj4g3v2644190.1
– ATP synthase subunit-like protein [Medicago truncatula] gi|357519249|ref|XP_003629913.1|
Domains
9
Lj4g3v2644190.2
– ATP synthase subunit-like protein [Medicago truncatula] gi|357519249|ref|XP_003629913.1|
Domains
9
Lj4g3v2951230.1
– DNA-binding protein PD1 [Pisum sativum] gi|2213536|emb|CAA67290.1|
Domains
11
Lj4g3v3114650.1
– HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1|
Domains
17
Lj5g3v1208330.1
– DNA-binding protein [Medicago truncatula] gi|357504087|ref|XP_003622332.1|
Domains
11
Lj6g3v0423840.1
– HMGI/Y [Pisum sativum] gi|899367|emb|CAA61747.1|
Domains
17
Lj6g3v0755720.1
– PREDICTED: high mobility group protein HMG-I/HMG-Y isoform X2 [Ochotona princeps] gi|504157635|ref|XP_004590339.1|
Domains
3
LotjaGi1g1v0007100_LC.1
– Transducin/WD40 repeat protein; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P79987|HIRA_CHICK Protein HIRA; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi1g1v0007100_LC
Domains
4
LotjaGi1g1v0092300.1
– HMG-Y-related protein A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|A0A1J7HLR9|A0A1J7HLR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0092300
Domains
18
LotjaGi1g1v0161700_LC.1
– Amyloid beta A4 precursor protein-binding family B member 1-interacting protein; TAIR: AT5G39820.1 NAC domain containing protein 94; Swiss-Prot: sp|Q6ZFZ4|DEK1_ORYSJ Calpain-type cysteine protease ADL1; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi1g1v0161700_LC
Domains
5
LotjaGi1g1v0224300.1
– Transcription factor jumonji domain-containing protein; TAIR: AT4G00990.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7M755|K7M755_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0224300
Domains
17
LotjaGi1g1v0311000_LC.2
– 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT2G16950.1 transportin 1; Swiss-Prot: sp|Q18211|RCC1_CAEEL Regulator of chromosome condensation; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi1g1v0311000_LC
Domains
3
LotjaGi1g1v0569400.1
– AT hook motif DNA-binding family protein; TAIR: AT2G33620.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O22812|AHL10_ARATH AT-hook motif nuclear-localized protein 10; TrEMBL-Plants: tr|V7AUS6|V7AUS6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0569400
Domains
19
LotjaGi2g1v0138100_LC.1
– High mobility group protein HMGI-C; TAIR: AT5G46200.1 carboxyl-terminal proteinase-like protein (DUF239); Swiss-Prot: sp|Q95QK3|JMJ31_CAEEL Lysine-specific demethylase jmjd-3.1; TrEMBL-Plants: tr|F6HE43|F6HE43_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0138100_LC
Domains
3
LotjaGi2g1v0198500.1
– Histone H1; TAIR: AT1G48620.1 high mobility group A5; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|V7CTB3|V7CTB3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0198500
Domains
17
LotjaGi2g1v0415000.1
– AT hook motif DNA-binding family protein; TAIR: AT4G17950.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|Q940I0|AHL13_ARATH AT-hook motif nuclear-localized protein 13; TrEMBL-Plants: tr|A0A0L9UQM7|A0A0L9UQM7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0415000
Domains
12
LotjaGi3g1v0088400_LC.1
– Imidazole glycerol phosphate synthase subunit HisF; TAIR: AT1G62820.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|A0A072TE97|A0A072TE97_MEDTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0088400_LC
Domains
8
LotjaGi3g1v0105100_LC.1
– RNA-binding protein; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G; TrEMBL-Plants: tr|A0A087SFR6|A0A087SFR6_AUXPR Eukaryotic translation initiation factor 3 subunit G; Found in the gene: LotjaGi3g1v0105100_LC
Domains
15
LotjaGi3g1v0123600_LC.1
– AT hook motif DNA-binding family protein; TAIR: AT2G33620.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O22812|AHL10_ARATH AT-hook motif nuclear-localized protein 10; TrEMBL-Plants: tr|A0A0S3SCI8|A0A0S3SCI8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0123600_LC
Domains
7
LotjaGi3g1v0227100_LC.1
– AT hook motif DNA-binding family protein; TAIR: AT4G00200.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|Q4V3E0|AHL7_ARATH AT-hook motif nuclear-localized protein 7; TrEMBL-Plants: tr|I3SDN1|I3SDN1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0227100_LC
Domains
2
LotjaGi3g1v0382100.1
– AT hook motif DNA-binding family protein; TAIR: AT2G45850.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O80834|AHL9_ARATH AT-hook motif nuclear-localized protein 9; TrEMBL-Plants: tr|A0A0S3SYX0|A0A0S3SYX0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0382100
Domains
16
LotjaGi3g1v0382200.1
– AT hook motif DNA-binding family protein; TAIR: AT2G45850.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O80834|AHL9_ARATH AT-hook motif nuclear-localized protein 9; TrEMBL-Plants: tr|V7AN95|V7AN95_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0382200
Domains
16
LotjaGi3g1v0481300.1
– AT hook motif DNA-binding family protein; TAIR: AT2G45850.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O80834|AHL9_ARATH AT-hook motif nuclear-localized protein 9; TrEMBL-Plants: tr|A0A0S3SCI8|A0A0S3SCI8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481300
Domains
13
LotjaGi4g1v0078100_LC.1
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A0L9VAR9|A0A0L9VAR9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0078100_LC
Domains
14
LotjaGi4g1v0078100_LC.2
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
Domains
14
LotjaGi4g1v0078100_LC.3
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
Domains
14
LotjaGi4g1v0078100_LC.4
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
Domains
14
LotjaGi4g1v0078100_LC.5
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
Domains
14
LotjaGi4g1v0078100_LC.6
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
Domains
14
LotjaGi4g1v0078100_LC.7
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
Domains
14
LotjaGi4g1v0147700_LC.1
– HMG-Y-related A; TAIR: AT5G27890.1 hypothetical protein; Swiss-Prot: sp|A6ZMG6|MYO5_YEAS7 Myosin-5; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi4g1v0147700_LC
Domains
12
LotjaGi4g1v0165500_LC.1
– Auxin response factor; TAIR: AT1G66530.1 Arginyl-tRNA synthetase, class Ic; Swiss-Prot: sp|P44969|IGA0_HAEIN Immunoglobulin A1 protease autotransporter; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi4g1v0165500_LC
Domains
3
LotjaGi4g1v0188300.1
– AT hook motif DNA-binding family protein; TAIR: AT4G17950.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|Q940I0|AHL13_ARATH AT-hook motif nuclear-localized protein 13; TrEMBL-Plants: tr|V7CEI0|V7CEI0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0188300
Domains
12
LotjaGi4g1v0221300_LC.1
– RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P51123|TAF1_DROME Transcription initiation factor TFIID subunit 1; TrEMBL-Plants: tr|G7IEB7|G7IEB7_MEDTR PHD finger protein, putative; Found in the gene: LotjaGi4g1v0221300_LC
Domains
3
LotjaGi4g1v0243300_LC.1
– RNA-binding family protein, putative; TAIR: AT5G54900.1 RNA-binding protein 45A; Swiss-Prot: sp|Q1HE00|EIF3G_BOMMO Eukaryotic translation initiation factor 3 subunit G; TrEMBL-Plants: tr|V7BYR1|V7BYR1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0243300_LC
Domains
16
LotjaGi4g1v0325400_LC.1
– Transducin/WD40 repeat protein; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi4g1v0325400_LC
Domains
9
LotjaGi4g1v0425400.1
– AT hook motif DNA-binding family protein; TAIR: AT1G63470.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|Q8GXB3|AHL5_ARATH AT-hook motif nuclear-localized protein 5; TrEMBL-Plants: tr|O04696|O04696_PEA AT-hook motif nuclear localized protein 1; Found in the gene: LotjaGi4g1v0425400
Domains
12
LotjaGi4g1v0463300.1
– Histone H1; TAIR: AT3G18035.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|Q93YH8|Q93YH8_SOYBN HMG I/Y like protein; Found in the gene: LotjaGi4g1v0463300
Domains
17
LotjaGi5g1v0010800_LC.1
– General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8BL74|TF3C2_MOUSE General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0010800_LC
Domains
5
LotjaGi5g1v0010800_LC.12
– General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8WUA4|TF3C2_HUMAN General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|K7LHU1|K7LHU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0010800_LC
Domains
11
LotjaGi5g1v0010800_LC.13
– General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8BL74|TF3C2_MOUSE General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0010800_LC
Domains
5
LotjaGi5g1v0010800_LC.3
– General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8BL74|TF3C2_MOUSE General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0010800_LC
Domains
5
LotjaGi5g1v0010800_LC.7
– General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8BL74|TF3C2_MOUSE General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0010800_LC
Domains
5
LotjaGi5g1v0010800_LC.9
– General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8WUA4|TF3C2_HUMAN General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0010800_LC
Domains
11
LotjaGi5g1v0058600_LC.1
– Rho guanine nucleotide exchange factor 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q60875|ARHG2_MOUSE Rho guanine nucleotide exchange factor 2; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi5g1v0058600_LC
Domains
4
LotjaGi5g1v0093200.1
– General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q5RDC3|TF3C2_PONAB General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|K7LHU1|K7LHU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0093200
Domains
11
LotjaGi5g1v0168200.1
– Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; TAIR: AT5G36740.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|A0A1J7HIH7|A0A1J7HIH7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0168200
Domains
21
LotjaGi5g1v0194500.1
– AT hook motif DNA-binding family protein; TAIR: AT5G62260.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|Q9LVB0|AHL6_ARATH AT-hook motif nuclear-localized protein 6; TrEMBL-Plants: tr|A0A151U5L7|A0A151U5L7_CAJCA Putative DNA-binding protein ESCAROLA; Found in the gene: LotjaGi5g1v0194500
Domains
12
LotjaGi6g1v0056500.1
– HMG-Y-related protein A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|A0A1J7HLR9|A0A1J7HLR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0056500
Domains
18
LotjaGi6g1v0056600.1
– HMG-Y-related A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|G7J9E3|G7J9E3_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi6g1v0056600
Domains
17
LotjaGi6g1v0077900_LC.1
– RNA-binding protein; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G; TrEMBL-Plants: tr|A0A087SFR6|A0A087SFR6_AUXPR Eukaryotic translation initiation factor 3 subunit G; Found in the gene: LotjaGi6g1v0077900_LC
Domains
16
LotjaGi6g1v0181300_LC.1
– High mobility group protein HMGI-C; TAIR: AT4G35520.7 MUTL protein homolog 3; Swiss-Prot: sp|Q3ACX5|RIMO_CARHZ Ribosomal protein S12 methylthiotransferase RimO; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi6g1v0181300_LC
Domains
4
LotjaGi6g1v0181300_LC.2
– High mobility group protein HMGI-C; TAIR: AT4G35520.5 MUTL protein homolog 3; Swiss-Prot: sp|Q3ACX5|RIMO_CARHZ Ribosomal protein S12 methylthiotransferase RimO; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi6g1v0181300_LC
Domains
4

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 1.19