Domain Predictions — View

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TIGR00625

Source: TIGRFAM

Description

tfb2: transcription factor Tfb2

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000439 View details of GO:0000439 AmiGO InterPro QuickGO	Cellular component	Transcription factor TFIIH core complex	The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD.	Subterm of GO:0090575
GO:0001671 View details of GO:0001671 AmiGO InterPro QuickGO	Molecular function	ATPase activator activity	Binds to and increases the ATP hydrolysis activity of an ATPase.	Subterm of GO:0008047 GO:0060590
GO:0006289 View details of GO:0006289 AmiGO InterPro QuickGO	Biological process	Nucleotide-excision repair	A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).	Subterm of GO:0006281

Associated Lotus transcripts 3

Transcript	Name	Description	Predicted domains	Domain count
Lj4g3v0451070.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: general transcription factor IIH subunit 4-like [Cicer arietinum] gi\|502142615\|ref\|XP_004505045.1\|	Domains IPR004598 PF03849 PTHR13152 TIGR00625	4
LotjaGi4g1v0055200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription factor; TAIR: AT4G17020.1 transcription factor-like protein; Swiss-Prot: sp\|Q680U9\|TFB2_ARATH RNA polymerase II transcription factor B subunit 2; TrEMBL-Plants: tr\|G7ZZ96\|G7ZZ96_MEDTR General transcription factor IIH protein; Found in the gene: LotjaGi4g1v0055200	Domains G3DSA:3.30.70.2610 IPR004598 IPR040662 PF03849 PF18307 PTHR13152 TIGR00625	7
LotjaGi4g1v0055200.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription factor; TAIR: AT4G17020.1 transcription factor-like protein; Swiss-Prot: sp\|Q680U9\|TFB2_ARATH RNA polymerase II transcription factor B subunit 2; TrEMBL-Plants: tr\|G7ZZ96\|G7ZZ96_MEDTR General transcription factor IIH protein; Found in the gene: LotjaGi4g1v0055200	Domains G3DSA:3.30.70.2610 IPR004598 IPR040662 PF03849 PF18307 PTHR13152 TIGR00625	7

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
TIGR00625	TIGRFAM	1	33.33