Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0055200 |
| Transcript ID | LotjaGi4g1v0055200.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT4G17020.1 transcription factor-like protein; Swiss-Prot: sp|Q680U9|TFB2_ARATH RNA polymerase II transcription factor B subunit 2; TrEMBL-Plants: tr|G7ZZ96|G7ZZ96_MEDTR General transcription factor IIH protein; Found in the gene: LotjaGi4g1v0055200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6655707..6663409) extracted from Lotus japonicus Gifu genome v1.2.
CCAATAACGAATTTCTAAAAATTACACTCACCTCCCTGAAGTTTTGTAATAATACATTGAGCACCCGTTTGGTTTTTAAA GCTAACTCAGTACCACCCTTACTGACGGGAGTAGACGGTGACTACTGTCTACCGTTTCAGCCCTCACCTCCAACAACCTC CTTGTCGTCCGTCGTCACCCACCGGACCTCCACCGCACCGCCGTTGAGGGAAGGAGGACCGCCGTCGCATCACCCTTTTT CTTCACTGTGAGTGCTTCTTCTTAAATTTGTTCTTCTTCTTCTTCAACTGTCACTCAACTCTCAAGTGTGGTAGAGTAAT AATTGTGTCTCGATTCATCCTATGTTGTTGTACTATTATCCTAGGTTGTTGCACTATTCCCTGTTTTTCTGATTTCACCA TTTGATGTTGCTGGCATAATTTTCATTGTTATGGTTTATTTGAATTGGTATTTGGGTTGAGTATCTAGATTCTTGTTTAT TTTTTTTAATTAGTATTTTGTTTGACTTGAAATTTGGTTTGTAACATGGTTGATATTATTCAAGCTTTTGAATTTGTACT ATAATTGGCTAGTGTTTTTTTAAAGCTTGGTTCCTTTTCTATTGCTCACCTTTGTATTGGATGTTCTCTGTTACTTTTCT CCAGGCTCTTGTTAATTAGAAACAAACTGAAGGTGAAGAAAAAGGTGTATGAGAATGCCTGAGGTTAGGATCATTGCGAA GAACTTCATGGACATGGTGGCTTCCATGCCCTCCATGAAGCTTGATAAGCTCTATGAAAATGGATTCATCTGTGAAGCTA TTCTCAGGTTTTTGTCCCCACAAAACAACTTTTCATGTTTTCTTAGCTTATGTAAAAGATTATGTGTCTTTTTACAATAA TATTAGGTTCTTTTATGGGATCTACTCTCCAGATTGTGTAGTTTTCATAGCTCTTGGGAATTCTGTATTCAAAATATGTG CCATTGTTGTGGAATTATTTTGTAATTTTTTTTCTTTATGTTTATAATTAAGTGCGCTACTTAAGTCCCCGAATGATAGC TCAACTGGTAAGAGCTAGGGGACATATAGGTTGGGTGGGGGAGGTCCAGGGATCAATCTCTGAAGGGTACAATTTATCTT TCCGATGCACCAAAAAAAGTGGGCTACTTAAATGGTATTTGTTTATTAGTTTCTTATGTTTTACTTTGTTAATATCAGGT CTCTTCCACCTCTAGCAAAGAAATATGTTTTACAGCTCCTGCATATTGATGGGCTGGTGTCAGCTAAATTATTGGAGGAG TGGGTGCTTCCAGATGGATTTTCAAAGCACAGAGTTGCCATTGATAGATTGGTTCAGTTGAGAGTTTTCATTGAAGCTGC TGACAGGTACATGATTATTCTATCTTGAAAAGTTTCATTTTCTATATGTTTCATGAAGATGAAAAGTAGAGTGCTTCTGA ATGGTTCAAACTGATTCATTTGATTTCGACATATAAGTGAACCCTTAGTATTAGGGTTCAATCAGAATGGGAAAGTGAAA GAAAATGTAATAGAGTTTGACGAGAATGAGAGAAAACAAAGAGAAAATTTGTATTCTGAATTGTAATATTATTTAATGAA TGAGTTGTATATAATTACATCCGCTTCACAAGAATTTATAGAAGACTAGCTTAGTAACGAACTTGATGGTTAAGTGACAC ACCTTAGCTGTAAGACTGACTGCTCTGACAAGCACAGCTATTACAAGCTGACTCAGCTACAATACAGTAACTGAAAGATC GTAATGCTATCTATTGTTGCTATGAGGTACTATAGTGACTAGTAACTAAACACTTAATTACTCTGATATCTACCTCTCAA ACTCACTGTGGAATCAGTGAAAAATGATATAGAATCCTGAGTTTGTGATACAGCCCACATAGAGAAGCCCATAATTAAGC ATGTATACAGCAGGAGAAAGTTGAGTGTGATATGCCCTATCATAGGACATGCACATCAAGCCTTCCTCTAATTTTTCTTT GATGAAATGTCTACCTTTTTCATTGGGTTTGATCATATCATGCTATATGGGATTATGAGCAATATTAATAGCTGACTTGT TGCCACAATAGAGCTTCTAAGACCTTCATATTGGATCTTCAAATCGTCCAAGATAATTTTGAACATAACAGCCCTCAGTA TCCTTGAGCTGATTTAGGAGGCTCCAAATTAGGCTTGATATCAGAATTAGGAGCAATATTTGGTGACGGAAAGGGCTTAA CAACACGTGTTGGTTAATTAGGTAGTTCAAGGAACTCATGACTCACAAGGATTATCTTCCATCATTGAGATTCTCCCTTA AGGGTAAGACTTAGAGAAGAAGGCTTATTTTCAGTGAAGATGATATCAGCAGACATATGCCATTTTTTGGATGAGGGGTC ATAGAACTTTACCCTTTTTGAGTGGATGAATACATAAGGAAAACACACATTATAGACCGAGGGTCAGGCTTAGCTCTATG GTGGCTATGAACTTAGACAAAGGCTGTGCACCCAAATAACCTAGGTATGAGACCGTGTTGGAGGTCCATGAGTGTGGAGC TGTTAAGGACCTCAATGGGGCTTTTGTAATTTAAAATTCTTGAGGGGAATCTATTTATCATGTATGAGATAGTGAGAACA GCCTCTACCCTATATGATTTACGAACCTTTCCTTGACAGATAAGAGCCCGATAGTGTTGAGTTAGTCTACTATTCCTTTC AGCCAACCCATCTTGTTGGAGGCATGTTGACACAAATTTTTTTTTTTGATAGGAAAATGTTAGTTGTTAGTATTGTTAGT AAATTAGTCCCTCCTCAGGGTTCGAACCCTGGACCCTTCACCCTTCATCCCACCCAACCCTTATGTCCCCTAGCCTAATT GAAAGTAGGGAGAAAATGTTTGATTGAAATCATCCCTTGCATTGTGACCCTAAATTGATTTGGAATCATTGAATGGAAAT TGGGAATGATGGTACTCACATCAGATTTTCTATCTCTTATTAGGATATTATCTTTTATTAGGAGCATATCATTTAAGATA TTATTCTTATTAGAGTAGGTTACTATAAATAGGAGTATTGTCACTAGGGGAAGGCAAGCAATTGATTATTAAGTTAAAAG GTTTATACCTTATAAGGGTTTTCCCTTGTTAAGATGGTTTCCTTCTTGTGTCTTTTATTTTGATAATAGATCAGTTATTT TATCCAGTAAATTACCTACCTGCCCCTATTTCTATTGTGTTTTGGCTGTTTGGGATTTCCAACCCTAACAGAGTCACTTC TCTGGATTATATAGATTATTGTCCATCTCATTATGTGTATTTGTGTTTAGCTTTAAAAGACACAGTTCCAGAACAGTGCA ATTATCATTTTGAAGCCTTTCCTTATACCATTCCACATAAGTAATTTTTCTTCTTCTGGCAGGAAGAATGAAAAGACTTA CAAAGTTAATCCAACATTTCAGAGAAGTCTCCAGAAACTTTTACTACATGGGTGAGTGGTACTTCATTTCATCTTATTTT TCTGTTCATATTTTTGGATAAGCTTCTATTAATGATAATATTCATCTCATCTTGTTCCCTTGATGCCATGAGGATATACA AAACATGTCTGTGTCATGCTAAAATCCCTTCCACTATTTATTTTGAGTTAACAAACCTATATAGATAGTAGGTGGTCTCC ATGGAATTTCTTCACCTGAATGGCATTTAATAGTCTCTCATGCATCCTGAATTTATTATGAAAAGCAATTTCTCTAATGT AGTTATTAAGATGTAAACTGATGTCAGACAAGTTCAATATTAGCTTCAGCTGTGGTAATATTTTCTTGTGAATAAATGAC AGTGGAACTTTGCCAAGGGAATCAATGCCTTCTAATATCACTGTGAGACTACCAACCTTAGAAGATCTTGAGGCTTATGC TCTAGAACAATGGGAGGTACAGTGTTTTATATTTGATTTCAATTTCTATTTATTCTGTACATTTACTTAAGAAATTTAAT CTTTAATATTGTTTGTTTCATAAGTTGCTTTAATTATTTGATATAATTAATCTGAAGTGCCTTCTTTAAATTTTGACTAA AATGAAGCCTAAACTCTCCACTGACTTTGTTTTGTGAATGATGAACTAGCGTTTCTTGCTGCAACTTATAAGCCCAAGTC ATGCTGAAAAATCCTTAAATATAAGTTCTTCTTTGATGAAAGTTTTCCAGCGGCGTCTCGTGAGTCAAAGGTTTTGTTTT ACTTGGCATTATTACTTCTCATTTGTAACAGTGATATATGTATGTGGGCGCTGCAAACTATATCTCACATTTGATGTCAT TTTTTTATGTACCAATACAGAGATAGAGAAGCTCCAAAATTGACTGAAAGTGGTTTCCAGTTTTTGGTATGCATCAAATG ATCTATTAGTTACTTGAACTTAATGCAATGCAGTCTCCTAAATATAGACTTTTTTCCTTATGAATTGCAGCTGATGGATA CAAATGCACAGCTTTGGTACATCATCAGAGAATATATATCTAATTCTGAGGTAGCTCTATCATTTTCTATTTAATTTCTT TGCTATTTGTTTTCTACATACTCTCCCTCATCCACTTTTAGTGCAGGAGAGAGGTGTTGAGGCCGCTGACTTGATCTCTT TCATGCTAGAGCTTAGTTTTCATGTCATTGGGGAGGTAAAAAATCTTATTCCTTGGTGGGAATCTGTTGATTATGAAGCT GTTTAATTATTCTACATTACTTCCACCAGTGTTGATCTGATAAACTTTGTTATCTCATTCGTTTTCTCCCTATAGCTGTG TTTGACAAAAACTGACTCTTAATTTTTTTCAATGCATTAGGCGTATAATATAAACACATTGACCGATTTTCAGAGGAACA TAATTAAGGACCTAGCAGACCTTGGACTGGTTAAACTTCAACAGGTTATAATATTTCTTTGCTTATTTTTGTCGATAATA TAATGAGGCTCATATAATTTTAACTGTATATTTAATAATCAGTATTTGTCTCCTTTTTTCTTTCTTTTTGTGATAACTTT ATAGGGAAGGAAAGAAAGTTGGTTTATACCTACAAAATTGGCCACCAATCTTTCAGTGAGCTTGGCTGACTCATCATCTA GAAAAGAGGTCTCTTCTTGGTTTCCCAATGAATTTATTCTGATGGAAAATTAAATGTAGTCTTGTTTCAGCATGTGGTTT TGGTAAACTTCTTAACAGGCATGCTATCGGGTAGGGGCTCTGTAGTGACTAGTGAGTTTTGTTTGTTTCAGCTGCACTTT TCCCTTTGTTCCTTGTTCACATAGTTTGCCATGTTCTTCTCCTTATATTCCTTCTTTCTTATAATAAAATTTATTCTTTT ATCAACAAGAAGAAAGGAAAAACAGATTTAGATGTTGCTTTGAGACATTTATATATGGCCAAGTTGCTTTATTTGCTGTT AGTATATGCATGGATGTTTCTGTTGGGCAGGTTTGGTGTCTTGCTTGCTTCATCTCTGAAATTCTAACTCACAGAAAACT CACACAGAAAACTCATGTTTATTAGAGTTTTCAATTTTTACTGGATTACACTTGGGAAATCTGTTGATTCTTGTGCGTGA ATCTTTTGTTGAACTACTATCTCCCACTACCTTAGATTGATGATCTCTAAGCTCTAACATGTCAAATTCAATTGATCTTT GGTTTTTTCGTGAATTTATTATTTTCCGTTACAGATGGTAGCAACAATAAATGTGGCCTTTTCTTTTGAAAACAAATACT TTTTTGTGTAAAGAGTTGCGAATGTTATTGAATTTAATATGTCATTCTGTTTAATGTTTTTAGGGATTTGTGGTTGTGGA AACCAATTTTAGAGTTTACGCTTACTCAACTTCGAAATTACATTGTGAGATATTGCGGCTATTCTCAAGGTATGCCACCA AAATGTTATATTCTTCAATTTTCATCAAATAAGCCTTAGTCTTTCCTCCCTTTCCCCTGCACTTTTTGTTTTAGATCTTG TGGATATTAGAAGTTGATCTTCCTGGAAGATGCTATTCAATATGCTAACTAATACAATGTATATTATGAAATTGTTAATT TGCTAGTAAACTTTTCAGCTGCTTATTTGTCTCAACAAAATGTGTTTTTATTCATATCTAATTATCTAATAGTGAATAAT TGTTATGCATCCAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGAGCTATTACAAAAGAAAGCTTGTATAATGCTTT TGAAAATGGCATTACAGCAGATCAGGTAGGTATTAGAAAATTTATCATATAGTATCTGCTTTTTCACCCTTTCAGTTATG TAAACCAGTTTCCAACGAAGAAACCAAGAATTTCCATGAGGAAACCCTTTTTGACTTGACTTTTAGAAACTTTAATTCAG ACAATCTCGTATAAACAACTGTGTATATCATGTTGCAGATAATCAGTTTCCTTCAGCAGAATTCTCATCCTCGCGTTGCA GAGAGGATACCATCTGTGCCTGAAAATGTCACTGATCAGGTTTTGGATCTTAATATTCTGCGAGTTGGTTTCTTTTTTTT CTTCTGATGTTTAGCATTGTAATTATGACAGATTAGGCTGTGGGAAGCTGATCTGAACAGAGTTGAGATGAACGATGCAT ATTATTACGACGAGTTCCCTTCTAGGGTAAGCAACTTATTGCATGTTTGGATTGGTGATATGCATACAATCCACAACACG GAAACTTCAGAAGCTACACTTTGTGGTTTCTCTCTAAAAGTGATTATAGGACTCTTAACCGCTGAACCAAACACGTCCTT AGCATCTTTGACGTCTTAATAATCTCTTGTAATGTCTGTTTGATTGTTTGTCTCATTTGTGGGCAGGATGTATTTGAAGG TGCATGTGACTGTGCCAGGGAATGGAATGGTATGTTATGGGAAGATTCAAAGAAGATGCTTATGGTGGTCAAGGCTGAGG TACATACATACGTGCGAGATTATTTGCGCAGCCAAAAGTAGCAGGAAAGGAAGAACATCGGATGCATTCTGGTCCTACCA ATGTGCAATGGAGAACCTGGAACAAAAATGCTTTATCTTGAGCTTCTTTGAAAGGAAACAGGATGAAAGAAGCAATGTGG CCACAGTTGGCAGCCACATCTTTTTGATGTTTCATATACTCTTCCCTTCTATGAATATTTTTTAATCTTTTTTAATGAGG GGGCTGGCTATTGTTTTAAATTATTTTGATGCTTTGAAGCTTTTATATTTATTGTATTTATTAAAATAATTATAATTTGT TGTGGTCGAAATATTAAGCTTATAATCACAAATCTAAGTCAACAACTTTCTTCAATAAAACTATGTAAGCCATTGGCACA CTAATTGTCCAAACTACAAAATTTTCCAACATTTCCAGCTTATTGGTAAGATGATGCTTCCAAAGTCTCAAGGCAAAGCA AGACATAAAAAAAAAAAAACATACATTATGCTGATAAAAGCAAGATGTAGGTTAAAATACAGAAATTCCTGCAAAAGTTG CTTATAGAAAATGGTTGATTGTTTTTTTTTTCTGTGAATTTAGATTTTATTTCACTAGGTATAAGCATATTACCATAAGC GATGCTACCACCATTCCCACATCAAACTCCACCATTCTCAAGAAAATTACGTCATTAAGTTTTTAATTTTCTGAAATTTA GTTTCCTCCATGGTGGTTTCTGA
CDS sequence (LotjaGi4g1v0055200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAATGCCTGAGGTTAGGATCATTGCGAAGAACTTCATGGACATGGTGGCTTCCATGCCCTCCATGAAGCTTGATAA GCTCTATGAAAATGGATTCATCTGTGAAGCTATTCTCAGGTCTCTTCCACCTCTAGCAAAGAAATATGTTTTACAGCTCC TGCATATTGATGGGCTGGTGTCAGCTAAATTATTGGAGGAGTGGGTGCTTCCAGATGGATTTTCAAAGCACAGAGTTGCC ATTGATAGATTGGTTCAGTTGAGAGTTTTCATTGAAGCTGCTGACAGGAAGAATGAAAAGACTTACAAAGTTAATCCAAC ATTTCAGAGAAGTCTCCAGAAACTTTTACTACATGGTGGAACTTTGCCAAGGGAATCAATGCCTTCTAATATCACTGTGA GACTACCAACCTTAGAAGATCTTGAGGCTTATGCTCTAGAACAATGGGAGCGTTTCTTGCTGCAACTTATAAGCCCAAGT CATGCTGAAAAATCCTTAAATATAAGTTCTTCTTTGATGAAAGTTTTCCAGCGGCGTCTCGTGAGTCAAAGAGATAGAGA AGCTCCAAAATTGACTGAAAGTGGTTTCCAGTTTTTGCTGATGGATACAAATGCACAGCTTTGGTACATCATCAGAGAAT ATATATCTAATTCTGAGGAGAGAGGTGTTGAGGCCGCTGACTTGATCTCTTTCATGCTAGAGCTTAGTTTTCATGTCATT GGGGAGGCGTATAATATAAACACATTGACCGATTTTCAGAGGAACATAATTAAGGACCTAGCAGACCTTGGACTGGTTAA ACTTCAACAGGGAAGGAAAGAAAGTTGGTTTATACCTACAAAATTGGCCACCAATCTTTCAGTGAGCTTGGCTGACTCAT CATCTAGAAAAGAGGGATTTGTGGTTGTGGAAACCAATTTTAGAGTTTACGCTTACTCAACTTCGAAATTACATTGTGAG ATATTGCGGCTATTCTCAAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGAGCTATTACAAAAGAAAGCTTGTATAA TGCTTTTGAAAATGGCATTACAGCAGATCAGATAATCAGTTTCCTTCAGCAGAATTCTCATCCTCGCGTTGCAGAGAGGA TACCATCTGTGCCTGAAAATGTCACTGATCAGATTAGGCTGTGGGAAGCTGATCTGAACAGAGTTGAGATGAACGATGCA TATTATTACGACGAGTTCCCTTCTAGGGATGTATTTGAAGGTGCATGTGACTGTGCCAGGGAATGGAATGGTATGTTATG GGAAGATTCAAAGAAGATGCTTATGGTGGTCAAGGCTGAGGTACATACATACGTGCGAGATTATTTGCGCAGCCAAAAGT AG
Protein sequence (LotjaGi4g1v0055200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRMPEVRIIAKNFMDMVASMPSMKLDKLYENGFICEAILRSLPPLAKKYVLQLLHIDGLVSAKLLEEWVLPDGFSKHRVA IDRLVQLRVFIEAADRKNEKTYKVNPTFQRSLQKLLLHGGTLPRESMPSNITVRLPTLEDLEAYALEQWERFLLQLISPS HAEKSLNISSSLMKVFQRRLVSQRDREAPKLTESGFQFLLMDTNAQLWYIIREYISNSEERGVEAADLISFMLELSFHVI GEAYNINTLTDFQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSLADSSSRKEGFVVVETNFRVYAYSTSKLHCE ILRLFSRVEYQLPNLIVGAITKESLYNAFENGITADQIISFLQQNSHPRVAERIPSVPENVTDQIRLWEADLNRVEMNDA YYYDEFPSRDVFEGACDCAREWNGMLWEDSKKMLMVVKAEVHTYVRDYLRSQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 451 | 447 | 2.9E-162 | ||
| TIGRFAM | 15 | 452 | 438 | 7.8E-99 | ||
| Pfam | 17 | 368 | 352 | 9.5E-107 | ||
| Gene3D | 378 | 453 | 76 | 2.1E-22 | – | |
| Pfam | 383 | 450 | 68 | 4.1E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIH core complex | The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD. | ||
| Molecular function | ATPase activator activity | Binds to and increases the ATP hydrolysis activity of an ATPase. | ||
| Biological process | Nucleotide-excision repair | A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). |
Expression pattern of LotjaGi4g1v0055200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…