Domain Predictions — View

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TIGR00962

Source: TIGRFAM

Description

atpA: ATP synthase F1, alpha subunit

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0015986 View details of GO:0015986 AmiGO InterPro QuickGO	Biological process	ATP synthesis coupled proton transport	The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.	Subterm of GO:0006754 GO:0015985
GO:0045261 View details of GO:0045261 AmiGO InterPro QuickGO	Cellular component	Proton-transporting ATP synthase complex, catalytic core F(1)	The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.	Subterm of GO:0033178 GO:0044424 Part of GO:0045259
GO:0046933 View details of GO:0046933 AmiGO InterPro QuickGO	Molecular function	Proton-transporting ATP synthase activity, rotational mechanism	Enables the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.	Subterm of GO:0015078 GO:0019829 GO:0044769

Associated Lotus transcripts 3

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0124339.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATPase subunit 1 (mitochondrion) [Lotus japonicus] gi\|372450305\|ref\|YP_005090487.1\|	Domains G3DSA:1.20.150.20 G3DSA:3.40.50.300 IPR000194 IPR000793 IPR005294 IPR020003 IPR027417 IPR033732 MF_01346 PF00006 PF00306 PS00152 PTHR15184 PTHR15184:SF3 SSF47917 SSF52540 TIGR00962 cd01132	18
Ljchlorog3v0000470.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP synthase CF1 alpha subunit [Lotus japonicus] gi\|13518443\|ref\|NP_084803.1\|	Domains G3DSA:1.20.150.20 G3DSA:2.40.30.20 G3DSA:3.40.50.300 IPR000194 IPR000793 IPR004100 IPR005294 IPR020003 IPR023366 IPR027417 IPR033732 MF_01346 PF00006 PF00306 PF02874 PIRSF039088 PS00152 PTHR15184 PTHR15184:SF42 SSF47917 SSF50615 SSF52540 TIGR00962 cd01132	24
Ljmitog3v0000450.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATPase subunit 1 (mitochondrion) [Lotus japonicus] gi\|372450305\|ref\|YP_005090487.1\|	Domains G3DSA:1.20.150.20 G3DSA:2.40.30.20 G3DSA:3.40.50.300 IPR000194 IPR000793 IPR004100 IPR005294 IPR020003 IPR023366 IPR027417 IPR033732 MF_01346 PF00006 PF00306 PF02874 PIRSF039088 PS00152 PTHR15184 PTHR15184:SF3 SSF47917 SSF50615 SSF52540 TIGR00962 cd01132	24

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd01132	CDD	1	33.33