Domain Predictions — View

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TIGR01016

Source: TIGRFAM

Description

sucCoAbeta: succinate-CoA ligase, beta subunit

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006099 View details of GO:0006099 AmiGO InterPro QuickGO	Biological process	Tricarboxylic acid cycle	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.	Subterm of GO:0006101 GO:0044238 Part of GO:0009060

Associated Lotus transcripts 2

Transcript	Name	Description	Predicted domains	Domain count
Lj5g3v1118370.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Succinyl-CoA ligase beta subunit [Caragana jubata] gi\|146215968\|gb\|ABQ10186.1\|	Domains G3DSA:3.30.1490.20 G3DSA:3.30.470.20 G3DSA:3.40.50.261 IPR005809 IPR005811 IPR011761 IPR013650 IPR013815 IPR013816 IPR016102 IPR017866 PF00549 PF08442 PIRSF001554 PS01217 PS50975 PTHR11815 PTHR11815:SF1 SSF52210 SSF56059 TIGR01016	21
LotjaGi5g1v0154600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Succinate--CoA ligase [ADP]-forming] subunit beta; TAIR: AT2G20420.1 ATP citrate lyase (ACL) family protein; Swiss-Prot: sp\|O82662\|SUCB_ARATH Succinate--CoA ligase [ADP]-forming] subunit beta, mitochondrial; TrEMBL-Plants: tr\|A5HIG2\|A5HIG2_9FABA Succinate-CoA ligase subunit beta; Found in the gene: LotjaGi5g1v0154600	Domains G3DSA:3.30.1490.20 G3DSA:3.30.470.20 G3DSA:3.40.50.261 IPR005809 IPR005811 IPR011761 IPR013650 IPR013815 IPR016102 IPR017866 MF_00558 PF00549 PF08442 PIRSF001554 PS01217 PS50975 PTHR11815 PTHR11815:SF10 SSF52210 SSF56059 TIGR01016	21

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
TIGR01016	TIGRFAM	1	50.00