Domain Predictions — View

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cd01869

Source: CDD

Description

Rab1_Ypt1

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 9

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0303619.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RAB1C [Lotus japonicus] gi\|1370166\|emb\|CAA98160.1\|	Domains G3DSA:3.40.50.300 IPR001806 IPR005225 IPR027417 PF00071 PR00449 PS51419 PTHR24073 PTHR24073:SF520 SM00173 SM00174 SM00175 SM00176 SSF52540 TIGR00231 cd01869	16
Lj0g3v0303629.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RAB1C [Lotus japonicus] gi\|1370166\|emb\|CAA98160.1\|	Domains G3DSA:3.40.50.300 IPR001806 IPR005225 IPR027417 PF00071 PR00449 PS51419 PTHR24073 PTHR24073:SF520 SM00173 SM00174 SM00175 SM00176 SSF52540 TIGR00231 cd01869 mobidb-lite	17
Lj1g3v2922940.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RAB1B [Lotus japonicus] gi\|1370164\|emb\|CAA98159.1\|	Domains G3DSA:3.40.50.300 IPR001806 IPR005225 IPR027417 PF00071 PR00449 PS51419 PTHR24073 PTHR24073:SF520 SM00173 SM00174 SM00175 SM00176 SSF52540 TIGR00231 cd01869 mobidb-lite	17
Lj1g3v2922940.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ras-related protein RABD2a-like [Glycine max] gi\|356568583\|ref\|XP_003552490.1\|	Domains G3DSA:3.40.50.300 IPR001806 IPR005225 IPR027417 PF00071 PR00449 PS51419 PTHR24073 PTHR24073:SF520 SM00173 SM00174 SM00175 SM00176 SSF52540 TIGR00231 cd01869	16
LotjaGi1g1v0495000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ras family protein; TAIR: AT1G02130.1 RAS 5; Swiss-Prot: sp\|P28188\|RAD2A_ARATH Ras-related protein RABD2a; TrEMBL-Plants: tr\|I3SUV4\|I3SUV4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0495000	Domains G3DSA:3.40.50.300 IPR001806 IPR005225 IPR027417 PF00071 PR00449 PS51419 PTHR24073 PTHR24073:SF1109 SM00173 SM00174 SM00175 SM00176 SM00177 SSF52540 TIGR00231 cd01869 mobidb-lite	18
LotjaGi3g1v0067800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ras family protein; TAIR: AT1G02130.1 RAS 5; Swiss-Prot: sp\|P28188\|RAD2A_ARATH Ras-related protein RABD2a; TrEMBL-Plants: tr\|Q40204\|Q40204_LOTJA RAB1D; Found in the gene: LotjaGi3g1v0067800	Domains G3DSA:3.40.50.300 IPR001806 IPR005225 IPR027417 PF00071 PR00449 PS51419 PTHR24073 PTHR24073:SF1034 SM00173 SM00174 SM00175 SM00176 SM00177 SSF52540 TIGR00231 cd01869 mobidb-lite	18
LotjaGi4g1v0197400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ras family protein; TAIR: AT4G17530.1 RAB GTPase homolog 1C; Swiss-Prot: sp\|Q05737\|YPTM2_MAIZE GTP-binding protein YPTM2; TrEMBL-Plants: tr\|I3T7J4\|I3T7J4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0197400	Domains G3DSA:3.40.50.300 IPR001806 IPR005225 IPR027417 PF00071 PR00449 PS51419 PTHR24073 PTHR24073:SF1032 SM00173 SM00174 SM00175 SM00176 SM00177 SSF52540 TIGR00231 cd01869 mobidb-lite	18
LotjaGi6g1v0365400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ras-like protein; TAIR: AT3G11730.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp\|Q9ZRE2\|RABD1_ARATH Ras-related protein RABD1; TrEMBL-Plants: tr\|Q40201\|Q40201_LOTJA RAB1A; Found in the gene: LotjaGi6g1v0365400	Domains G3DSA:3.40.50.300 IPR001806 IPR005225 IPR027417 PF00071 PR00449 PS51419 PTHR24073 PTHR24073:SF1007 SM00173 SM00174 SM00175 SM00176 SM00177 SSF52540 TIGR00231 cd01869 mobidb-lite	18
LotjaGi6g1v0365400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ras-like protein; TAIR: AT3G11730.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp\|Q9ZRE2\|RABD1_ARATH Ras-related protein RABD1; TrEMBL-Plants: tr\|Q40201\|Q40201_LOTJA RAB1A; Found in the gene: LotjaGi6g1v0365400	Domains G3DSA:3.40.50.300 IPR001806 IPR005225 IPR027417 PF00071 PR00449 PS51419 PTHR24073 PTHR24073:SF1007 SM00173 SM00174 SM00175 SM00176 SM00177 SSF52540 TIGR00231 cd01869 mobidb-lite	18

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	11.11