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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0303619 |
| Transcript ID | Lj0g3v0303619.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | RAB1C [Lotus japonicus] gi|1370166|emb|CAA98160.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 183 | 183 | 3.70E-153 | – | |
| PANTHER | 1 | 183 | 183 | 3.70E-153 | – | |
| Gene3D | 3 | 179 | 177 | 3.40E-74 | ||
| ProSiteProfiles | 4 | 186 | 183 | 37.579 | – | |
| SUPERFAMILY | 4 | 177 | 174 | 1.52E-65 | ||
| SMART | 6 | 172 | 167 | 6.00E-33 | – | |
| CDD | 7 | 172 | 166 | 4.72E-127 | – | |
| TIGRFAM | 7 | 163 | 157 | 5.40E-34 | ||
| SMART | 9 | 172 | 164 | 4.00E-105 | – | |
| PRINTS | 9 | 30 | 22 | 1.80E-45 | – | |
| Pfam | 10 | 170 | 161 | 4.30E-66 | ||
| SMART | 11 | 171 | 161 | 4.60E-16 | – | |
| SMART | 14 | 186 | 173 | 1.60E-04 | – | |
| PRINTS | 32 | 48 | 17 | 1.80E-45 | – | |
| PRINTS | 50 | 72 | 23 | 1.80E-45 | – | |
| PRINTS | 112 | 125 | 14 | 1.80E-45 | – | |
| PRINTS | 147 | 169 | 23 | 1.80E-45 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of Lj0g3v0303619.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0303619.1, powered by CORGI.
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