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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0197400 |
| Transcript ID | LotjaGi4g1v0197400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras family protein; TAIR: AT4G17530.1 RAB GTPase homolog 1C; Swiss-Prot: sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2; TrEMBL-Plants: tr|I3T7J4|I3T7J4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0197400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:45395699..45402045) extracted from Lotus japonicus Gifu genome v1.2.
GTTGACCCAAAAAAATTTGAGAAGAAAGAAGATGATGATGAATTAGAAAAGTAAATCAAATAGAAAAACACGGTGCAGGA CACGTGGCAGGCGTTGATCTGGTTCATATACGTCACCCCACTCGCCCCTTCGATCCCTTATAGCTCCGACACCCGCGGGT CATTTTAAAACTCCACTCTCTCACACATTCTCTCGATTTCTTCTCCTCATCAATTTCTCTTTCTCCGGCGACGATCGCAG ATTCCGGCGACTCCTCCGCCGCCGAACCTCGTTCTCCTGCATCGCCATGAATCCTGAATAGTAAGTGTCAATTCTCCTCC TCGCTCGCTCTTCCCGTTTTACTTCTGCAAGTTCCGGTAATTCCCGTTAGCTTGTTTAGATCTGCTGTGTTCATCGTGCG GTGGTGGTGAATCTTGTGCTGATTCAGTTTTGTTTTACTGGCTTGTGATTGCGATGATTCCTGCTTCTGAAAATTTCCTT AACTGATTTAGATCTGTTTCTTCAGATGATTCAATTATGGTTTGGCTATTTTGGAAGGTTTTGATTCTCTGATCCGGTTT GGAGAGTCTTGTATTTTAATTTCAGACAAGTTTTTTTGATAACGATGATATAATTTCACCAATTGAACTTGTTCATCAGT TAGAATACGCGAGTTCTAAGGACTCGGTGATGATTATGTTGTGAATTTTCTTAAAATTGATTGATACCTTGGAAAAACAC TGACATTAATGGTTATCTTAAAATATTTATTGGAGGTGCCATATGTTTTTTTAATAGTTTTTCGGTGAGTGTAGGTAGTA ATATTGATCTCTAACTACGGATTGTTATTATTTTATTCTTCTGGGATTAGATTCATTTACTGATGTGAACAAAGGGATTG TTGAAGTTCTATGGAGTATGGACAGATCTATGAATATCAGTGCTGTTTGTTTTTGCCTTCTTTGAAATTCACGCTTACCA TTGTGAACCTTTGTGCAAACATGCACTGTGAGTCTGTGATGTTTGAGGAACAAGTGGTCCTCCCTAAAAAATGAATTTAA AATTTTTAACTATTGATTCTTGCTGAGATCGATAAGCATCTCCTGTAATCTACTGGGGTAATGCTAAGTGGATAAAAGTT TATTGGAAAAAAACAAACAAAGTTTTGTGGAGAGCTAAGTGGATTTTTGTACACAATAACAAGTATTGCATAAATCTCAA GATAAGTTTGATGATGAAGAATGTGTTGTCGGTGCCGGACTTATTCCATGGTTATGTGCTGTCCTATAACATGGCTGCCT AAATGCTATCTTTTTGGCAATCATGTTTTGCCGTATGCGGTGGCACATGTGCTTGTATTATGTTGCTGTATCCTAGGTCA TTCTCTTAGAAAAAGAATTGGCAGTTCCTTATTAGTTTAACTAAAATCTCCCTAATTGGAGTGTCCCTATGTTTCTTTCA GCGACTATTTGTTCAAGCTTTTGCTGATTGGAGATTCTGGTGTAGGCAAGTCATGTCTTCTCCTGAGGTTTGCTGTAAGT TTGGAGACTCTATCATTTTTCTTCTTCCTTCTTTAGGAACACTGCTTCATGGTCACCCTTTTTTTCAAATTTGAAAAATG AAGTCAAAAATACCTGCTGTACCATTCCCTATATTATAAAGGTCCAAATTTACTGAAGAACTAGAGAATGCAAGGTTTAC ATCACATATATTGATTTGTTTAATCAGAACTTTGGAATTCATTTTTTAGGCGTTGAATCATACAGTAAATTATATACATG TATATGCATTTGTGGAGGTTGTAGGGCCGAACAATTTTCTTTTTCTTTTTTGAGTTATACTTAACAAATAGAGATTACAC TTAACATTTTATTCTTTTGTGATACACAGGATGATTCATACCTTGACAGCTATATCAGTACCATTGGAGTGGACTTTGTA AGTAATGTGCCCCATTTAACCTTATTGGCATATGGAAAACCTGAACACTATGTGATTAATTATTTACCATGCTCCCTTCT GTAGAAAATCCGAACTGTTGAGCAGGATGGAAAGACTATTAAACTTCAAATTGTAAGTCCAAGATTATATTGATGTTATT TGAATGTTCTGATCGGAATATTATTTTATTATATGTCGAATTATTTTCTTACCTATGATCATTTTATTGTTATTTGAGTG TTCTGATAGGAATGTTTTCTTGACTACTAGAAAACTTGTTTTCTAAATCTATTATCTAAATTGCATCTTTTGAAATTGTC TTAGTTAGTTGTGTAAAAATAAATTTGAAGTTAATCTCCCATGTAGCCAAGAATCTCTCTCTCTCTCTCTCTCTCTCTCT CCCTCTCTCTCTCTCTCTCTCTAATGTTTAATGTAACTATCATTTTGTTCATTTACAAAGTGGCTAATTCCAAGTTGTTT GCGGTCAAGTATGTCCTTGGTTCATTCAAACAATAATATTTGAGGGCTTATGGTTACTCATAAAAATTAGGAAGTTAAAT TTTTTAGAACACTCCATCCCAATTATCTGGGATTATTGCTTTATTGTGTTTTGTAATTGTTGAAAGTTTTTTGTGCATTT TTTACTGTATAGTGGGACACTGCTGGTCAAGAACGTTTCCGGACAATCACAAGCAGCTACTACCGTGGGGCTCATGGCAT AATTGTAAGTCTTTCTAAACTTGTCCTTCCCCAGAATTTTTTTGATACATAGGTGTAATCTTATTGGAACTTTTGTAGGT TGTTTATGATGTCACTGACCAAGAGAGCTTCAACAATGTTAAGCAATGGCTGAATGAAATTGACCGTTATGCAAGTGAAA ACGTTAACAAGCTTCTAGTTGGAAACAAGTGTGATCTCACGGCAAATAAAGTTGTGTCCTATGAGACAGCAAAGGTGATT CTTAATTTGTTGATTAATGTCCCATGGGACACCCATTGAATCCCTTTCTTTTGTCTAATGTTTTGAAGTTTGTGCTTGCT GTTTTTCAGGCATTTGCAGATGAAATTGGAATTCCTTTCATGGAAACTAGTGCTAAGAACGCCACCAATGTGGAGCAGGC TTTCATGGCCATGGCTGCTGAAATTAAAAACAGGTGCGGTATCTTGAATATCCCTATATTTGTTAGACTAATTAATTGTC TACTGTTGAGATTTTTGTCTAAGTTTGTGAAGTTCAATGAATCTTTACTTGTGTTTCTTTCTCACAGAATGGCAAGCCAA CCAGTGAACAATGCAAGGCCTCCAACAGTCCAAATCCGAGGACAGCCAGTGAATCAAAAGTCTGGTTGCTGCTCGTCTTA GAGATGACTTATCTGTGGTCGTAGACGTTTATATGTGTCTCAGTGGGCATGTAAAACTAGTTTTTCACATTATGCTTTCG TATGAAGATTGTTCGTCATGATTTGCTCCTTATATCGTTCAGCTCATTGTTAAAACTTCCATTCTTTTTTATGTATTTGA TTTTAACAAAAAAATATTTGTACAAAAATTAAGAATGTTGGTGAATAGCAGTATTTGCCTTGTTCTTTCTTCTTTACCTT GTGCAATTTGCGAATTAGTTCATTTGTCTCTGTAGGTGTCGAACATATAGTTCAAGTGCATTGACTCTTGTAAGTTCTTT AAATAAGTTACATAGTCTCTTTTGTTTTGTTGAGTGAGCGCCTATTTGGTCCTATAAAGAATGTCCAGAGTATCTCAAGT TACCGATTTTCTCTCTGGAAGCATAATAGGCACCACTAGTATTCTAAAGTACCATTGCATTGCCATATTATTCTAATCAA TAAATAGCTTTACAAAGTAAAATATATGTGTGAAGATTTTGCAAAATTAAATAATTTTTATATTCAAACAATCTGGGGTT GGACTACCCTATTCAATAGTATAGAATCCCCCAATTCGACAATCCTATGTCCAAAGAAAAGGTTGTCTCTGTTTTCCTGA TGAGTGCTGCATCTCCAACTTTTGACACAGTAAGCCATCGATATTCTCAGAATGGATATAAATGAGTCAGTTTCCAGTCC ACTACAACCCATGAAGCCTTTTGATTTTGAAGTTAAAATATCAATCTTCTTTTCTCGAGGCCACATTTTGGTAAGCATCG GGTGTCAAGAAACAGTAATCAACTGCTTTCTCATTGTCTGATTCCCCAGAGAGCGTACGAACCTCACAAACTGTCCAAAA GGCTGCAAGTAAGGTGTGGGTATAAGGACATAGCAGTTGATATTCCTGAGCTAGAGCAATTAAGCATACTCTTCTAAATG TCTGGTATGGTATTCCTTTTAGTGTATAACTGATACCAAATCGACTTCAAGGTGATGAGCATCAGTGCATGACCGCATTG TGTTTACATGAATAAATTTAATAGCATTGTGTTCAGTGCAGACTATCAAGTTTACCAGTAATCACTGCAGGAGCAGAACC CATCCTTGAAATGGTGAAACCTTGTGGTATCCCTAACAATGATTTCTCTTCCTTCTATTGCTGAGATATACTTGATTGCA GTATGGCAATCACCACAAACTCTCAAGTTTTTAAACACCCGGATCGGAAGCCCTAATGGTACCTTCAAAAGGCCATATGC AATTGCCAGTTTCTCACTGTGCCATAAAAGAAGCTGTTCTTTCAGCTCCTCTCCCACATCATGCAAAGCAAATTCAAGAT CTGGCACGTACCCTGCCAACTTCATTTTCTTCTCCAATTCATTTAGTTTTTCATGTATAGATGCCAATTCAGGGTGTAAT CTGTCACTTGACCTAAACTCATGCACCTCACTGCTTATTTCAATCCAACTATACCCTGGTGCCTTCACGACTTTATTTTC TTTCATGGATCTTCTGATCCTAGCAACATGCTCCCATCTGTTTTGTGCTGCATAAACATTAGCCAATTGAACATATCCAG TTGCACTAGAAGGATCAAGCTCAAGCAGATTCTTGGCAGCAAACTCAGCAAGGTCCAAGTTTTTATGGATCCTACAAGCA CCCAGAAGTGTGCCGAAGATCGCAGGATGGGGCTTAAAAGGCATGCTTTTTATCAAATCTACAGCCTCTGGTAACCTACC CGCTCGACCAAGAAGATCAACCATGCATGCATAGTGTTCTGGCTTAGTTTTAATACCAAAATCCCTTACCATCATGTTAA AATACTGGACCCCAAGATCTACCAGCCCTGCATGGTTACAAGCTAATAACACTGCAACGAAAGTAATCCAATCTGGCTTC ATGCCATCATGTCTCATCTCATCAAACAGATGAAGAGCCTTTTCACCAGCTCCATGCTGAGCATAACCAGAAATCATCGC GTTCCAGCTCACAATATCTTTCCTCGGAATCTGAACAAATAATTCCCAGGCTTCCTTTAGGTCCCCACACTTGGCATACA TGCTAATCAGAGAAGTTCCGGCGGTTGTATCACTACTCAATGGAGATTTGCAGACCAATTGATGTACTTGTTTGCCCAGT TGCAATGCTGATAAATTACTACAACCCAACAAGACACTAGTCAAGCTCAAAGCATTAGGCTTAGCCCCACTTTCCAACAT TGACTTGAAAAGCTTCAACCCATCCTCTGCTCTTCCATTCTCAACATACCCAGCAATCATAGCATTCCATGTCACGAGGG TCTTCAATGACATTTCTCGAAACAACCTTTCTGCTGATTCAACCCTCCCAAACTTCATGTAGCCAGTGATCATAGCAGTC CACGTGATCACGCTCCTCACCGGAGCAGCATAGAAACACTCCACAGCAGCATCTAAATCCCCACAAGCAACATACCCAGA TACCATCGCACTCCACGAGACACAGTTTTTCTCCGGCATCACCGCAAACAGCATGCTCGCCTCACCCATCAATCCAACCT GAGCATAACCCGAGATCATCGTGTTCCAAGACGCTGTATCCTTAACCTCCATGCGGTCAAAGAAAGCCCGTGCACTACCA ACGCCAAAATGGTGCAAATGACAAGCCAACATAATGTTATATGAAACAGTGTTTGGTTCAGGAATTTTCTCAAACAGTTG GCGGGCTTGCTCGAAGTTGCCATGTTTCTTTGCAAAGGCTGAGAGGATGGAGTTCCAGGTAACAGTGGACTTCACTTTCA TGCTCTCAAAGACGCGGACAGCGGAATCCGTGTCGCCGGATCGAGCGTAGCTGGCGATGAGCTTGTTCGAAGCGACGACA TTGTTTTGGGTGAGTGTTTCATGATGATAGGAATGTAAGGGAACATAGATTTGGTGGTTTTGGGTGAGTGTTTGAAGTTT GGTTAGTGTAAGAAAGTACGAGGTTGATAAAGGGTTTTGGTTGTTGGTCCTCAACAATCGTAAAAAATACATGTATCAAT TGGGTTCGATTTCAGGCTCTGAGTTTT
CDS sequence (LotjaGi4g1v0197400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCCTGAATACGACTATTTGTTCAAGCTTTTGCTGATTGGAGATTCTGGTGTAGGCAAGTCATGTCTTCTCCTGAG GTTTGCTGATGATTCATACCTTGACAGCTATATCAGTACCATTGGAGTGGACTTTAAAATCCGAACTGTTGAGCAGGATG GAAAGACTATTAAACTTCAAATTTGGGACACTGCTGGTCAAGAACGTTTCCGGACAATCACAAGCAGCTACTACCGTGGG GCTCATGGCATAATTGTTGTTTATGATGTCACTGACCAAGAGAGCTTCAACAATGTTAAGCAATGGCTGAATGAAATTGA CCGTTATGCAAGTGAAAACGTTAACAAGCTTCTAGTTGGAAACAAGTGTGATCTCACGGCAAATAAAGTTGTGTCCTATG AGACAGCAAAGGCATTTGCAGATGAAATTGGAATTCCTTTCATGGAAACTAGTGCTAAGAACGCCACCAATGTGGAGCAG GCTTTCATGGCCATGGCTGCTGAAATTAAAAACAGAATGGCAAGCCAACCAGTGAACAATGCAAGGCCTCCAACAGTCCA AATCCGAGGACAGCCAGTGAATCAAAAGTCTGGTTGCTGCTCGTCTTAG
Protein sequence (LotjaGi4g1v0197400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQ AFMAMAAEIKNRMASQPVNNARPPTVQIRGQPVNQKSGCCSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 177 | 177 | 0.005 | – | |
| Gene3D | 2 | 200 | 199 | 1.3E-75 | – | |
| PANTHER | 3 | 201 | 199 | 4.3E-121 | – | |
| PANTHER | 3 | 201 | 199 | 4.3E-121 | – | |
| SUPERFAMILY | 4 | 179 | 176 | 5.5E-68 | ||
| ProSiteProfiles | 4 | 202 | 199 | 39.406 | – | |
| SMART | 6 | 172 | 167 | 6.9E-37 | – | |
| TIGRFAM | 7 | 163 | 157 | 5.8E-35 | ||
| CDD | 7 | 172 | 166 | 1.00003E-131 | – | |
| PRINTS | 9 | 30 | 22 | 4.1E-47 | – | |
| SMART | 9 | 172 | 164 | 1.2E-109 | – | |
| Pfam | 10 | 170 | 161 | 3.4E-67 | ||
| SMART | 11 | 171 | 161 | 5.4E-16 | – | |
| SMART | 14 | 199 | 186 | 8.4E-6 | – | |
| PRINTS | 32 | 48 | 17 | 4.1E-47 | – | |
| PRINTS | 50 | 72 | 23 | 4.1E-47 | – | |
| PRINTS | 112 | 125 | 14 | 4.1E-47 | – | |
| PRINTS | 147 | 169 | 23 | 4.1E-47 | – | |
| MobiDBLite | 177 | 202 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0197400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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