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Lj1g3v2922940.2

Overview

Field Value
Gene ID Lj1g3v2922940
Transcript ID Lj1g3v2922940.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ras-related protein RABD2a-like [Glycine max] gi|356568583|ref|XP_003552490.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24073
1 183 183 6.00E-146 –
PANTHER
PTHR24073:SF520
1 183 183 6.00E-146 –
Gene3D
G3DSA:3.40.50.300
3 179 177 2.40E-73
IPR027417
SUPERFAMILY
SSF52540
4 176 173 1.36E-64
IPR027417
ProSiteProfiles
PS51419
4 183 180 37.198 –
SMART
SM00173
6 172 167 5.20E-30 –
CDD
cd01869
7 172 166 6.49E-121 –
TIGRFAM
TIGR00231
7 163 157 2.40E-33
IPR005225
PRINTS
PR00449
9 30 22 3.20E-44 –
SMART
SM00175
9 172 164 4.60E-105 –
Pfam
PF00071
10 170 161 1.60E-65
IPR001806
SMART
SM00174
11 171 161 3.50E-16 –
SMART
SM00176
14 183 170 5.50E-04 –
PRINTS
PR00449
32 48 17 3.20E-44 –
PRINTS
PR00449
50 72 23 3.20E-44 –
PRINTS
PR00449
112 125 14 3.20E-44 –
PRINTS
PR00449
147 169 23 3.20E-44 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj1g3v2922940.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2922940.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.