Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

cd03272

Source: CDD

Description

ABC_SMC3_euk

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
Lj2g3v2905080.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 3-like [Cicer arietinum] gi\|502098061\|ref\|XP_004491146.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027417 IPR029685 PF02463 PTHR18937 PTHR18937:SF8 SSF52540 cd03272	10
Lj2g3v2905080.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 3-like [Cucumis sativus] gi\|449448840\|ref\|XP_004142173.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027417 IPR029685 PF02463 PTHR18937 PTHR18937:SF8 SSF52540 cd03272	10
LotjaGi1g1v0060900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q56YN8\|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr\|I1M7D7\|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 IPR036277 IPR041741 PF02463 PF06470 PTHR43977 PTHR43977:SF1 SM00968 SSF52540 SSF75553 cd03272	17
LotjaGi1g1v0060900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q56YN8\|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr\|I1M7D7\|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 IPR036277 IPR041741 PF02463 PF06470 PTHR43977 PTHR43977:SF1 SM00968 SSF52540 SSF75553 cd03272	17
LotjaGi1g1v0060900.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q56YN8\|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr\|M5WT05\|M5WT05_PRUPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0060900	Domains G3DSA:3.40.50.300 IPR003395 IPR027417 IPR041741 PF02463 PTHR43977 PTHR43977:SF1 SSF52540 cd03272	9
LotjaGi1g1v0060900.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q56YN8\|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr\|I1M7D7\|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 IPR036277 IPR041741 NON_CYTOPLASMIC_DOMAIN PF02463 PF06470 PTHR43977 PTHR43977:SF1 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00968 SSF52540 SSF75553 SignalP-noTM cd03272	23

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd03272	CDD	1	16.67