Domain Predictions — View

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PF02463

Source: Pfam

Description

RecF/RecN/SMC N terminal domain

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 33

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0358309.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 2-1-like [Cicer arietinum] gi\|502158009\|ref\|XP_004510992.1\|	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027120 IPR027417 NON_CYTOPLASMIC_DOMAIN PF02463 PF06470 PTHR18937 PTHR18937:SF9 SM00968 SSF52540 SSF75553 TRANSMEMBRANE	16
Lj2g3v1695250.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 1-like isoform X1 [Cicer arietinum] gi\|502114983\|ref\|XP_004495097.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR010935 IPR024704 IPR027417 PF02463 PF06470 PIRSF005719 PTHR18937 PTHR18937:SF177 SM00968 SSF52540 SSF75553 cd03275	15
Lj2g3v2905080.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 3-like [Cicer arietinum] gi\|502098061\|ref\|XP_004491146.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027417 IPR029685 PF02463 PTHR18937 PTHR18937:SF8 SSF52540 cd03272	10
Lj2g3v2905080.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 3-like [Cucumis sativus] gi\|449448840\|ref\|XP_004142173.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027417 IPR029685 PF02463 PTHR18937 PTHR18937:SF8 SSF52540 cd03272	10
Lj2g3v2905090.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 3-like [Glycine max] gi\|356554411\|ref\|XP_003545540.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027417 IPR029685 PF02463 PTHR18937 PTHR18937:SF8 SSF52540 mobidb-lite	10
Lj3g3v0824810.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 5-like [Glycine max] gi\|356576425\|ref\|XP_003556332.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027131 IPR027417 IPR033268 PF02463 PTHR19306 PTHR19306:SF1 SSF52540 cd03277	11
Lj3g3v0824810.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 5-like [Glycine max] gi\|356576425\|ref\|XP_003556332.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027131 IPR027417 IPR033268 PF02463 PTHR19306 PTHR19306:SF1 SSF52540 cd03277	11
Lj3g3v0824870.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 5-like [Glycine max] gi\|356576425\|ref\|XP_003556332.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027131 IPR027417 IPR033268 PF02463 PTHR19306 PTHR19306:SF1 SSF52540 cd03277 mobidb-lite	12
Lj3g3v3724440.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 6-like [Cicer arietinum] gi\|502168978\|ref\|XP_004514508.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027132 IPR027417 IPR033268 PF02463 PTHR19306 PTHR19306:SF6 SSF52540 SSF75553 cd03276 mobidb-lite	14
Lj4g3v1062150.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 4-like [Glycine max] gi\|356573489\|ref\|XP_003554891.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 PF02463 PTHR18937 PTHR18937:SF231 SSF52540 SSF75553 cd03274 mobidb-lite	12
Lj5g3v1073870.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 1A-like [Glycine max] gi\|356548057\|ref\|XP_003542420.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 PF02463 PF06470 PTHR18937 PTHR18937:SF177 SM00968 SSF52540 SSF75553 cd03275	13
Lj5g3v1073870.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 1A-like [Glycine max] gi\|356548057\|ref\|XP_003542420.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 PF02463 PF06470 PTHR18937 PTHR18937:SF177 SM00968 SSF52540 SSF75553 cd03275 mobidb-lite	14
LotjaGi1g1v0060800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT2G27170.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q56YN8\|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr\|I1M7D7\|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060800	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027417 PF02463 PTHR43977 PTHR43977:SF1 SSF52540 mobidb-lite	9
LotjaGi1g1v0060900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q56YN8\|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr\|I1M7D7\|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 IPR036277 IPR041741 PF02463 PF06470 PTHR43977 PTHR43977:SF1 SM00968 SSF52540 SSF75553 cd03272	17
LotjaGi1g1v0060900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q56YN8\|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr\|I1M7D7\|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 IPR036277 IPR041741 PF02463 PF06470 PTHR43977 PTHR43977:SF1 SM00968 SSF52540 SSF75553 cd03272	17
LotjaGi1g1v0060900.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q56YN8\|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr\|M5WT05\|M5WT05_PRUPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0060900	Domains G3DSA:3.40.50.300 IPR003395 IPR027417 IPR041741 PF02463 PTHR43977 PTHR43977:SF1 SSF52540 cd03272	9
LotjaGi1g1v0060900.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q56YN8\|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr\|I1M7D7\|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 IPR036277 IPR041741 NON_CYTOPLASMIC_DOMAIN PF02463 PF06470 PTHR43977 PTHR43977:SF1 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00968 SSF52540 SSF75553 SignalP-noTM cd03272	23
LotjaGi3g1v0061500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT5G62410.1 structural maintenance of chromosomes 2; Swiss-Prot: sp\|Q9C5Y4\|SMC21_ARATH Structural maintenance of chromosomes protein 2-1; TrEMBL-Plants: tr\|A0A072TZX1\|A0A072TZX1_MEDTR Structural maintenance of chromosomes protein; Found in the gene: LotjaGi3g1v0061500	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR024704 IPR027120 IPR027417 IPR036277 NON_CYTOPLASMIC_DOMAIN PF02463 PF06470 PIRSF005719 PTHR43941 PTHR43941:SF2 SM00968 SSF52540 SSF75553 TRANSMEMBRANE cd03273	22
LotjaGi3g1v0119700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes family protein; TAIR: AT5G15920.1 structural maintenance of chromosomes 5; Swiss-Prot: sp\|Q9LFS8\|SMC5_ARATH Structural maintenance of chromosomes protein 5; TrEMBL-Plants: tr\|V7CP68\|V7CP68_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0119700	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027131 IPR027417 PF02463 PTHR45916 SSF52540 cd03277	9
LotjaGi3g1v0552100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes family protein; TAIR: AT5G07660.1 structural maintenance of chromosomes 6A; Swiss-Prot: sp\|Q9FLR5\|SMC6A_ARATH Structural maintenance of chromosomes protein 6A; TrEMBL-Plants: tr\|A0A0S3SER5\|A0A0S3SER5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0552100	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027132 IPR027417 IPR036277 PF02463 PTHR19306 PTHR19306:SF9 SSF52540 SSF75553 cd03276 mobidb-lite	13
LotjaGi4g1v0139100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp\|Q9FJL0\|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr\|A0A151RK13\|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR024704 IPR027417 IPR036277 IPR041738 PF02463 PF06470 PIRSF005719 PTHR43939 PTHR43939:SF1 SM00968 SSF52540 SSF75553 cd03274 mobidb-lite	20
LotjaGi4g1v0139100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT5G48600.1 structural maintenance of chromosome 3; Swiss-Prot: sp\|Q9FJL0\|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr\|I1LWK5\|I1LWK5_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi4g1v0139100	Domains G3DSA:3.40.50.300 IPR003395 IPR027417 IPR041738 PF02463 PTHR43939 PTHR43939:SF1 SSF52540 cd03274	9
LotjaGi4g1v0139100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp\|Q9FJL0\|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr\|A0A151RK13\|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 IPR036277 IPR041738 PF02463 PF06470 PTHR43939 PTHR43939:SF1 SM00968 SSF52540 SSF75553 cd03274 mobidb-lite	18
LotjaGi4g1v0139100.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp\|Q9FJL0\|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr\|A0A151RK13\|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR024704 IPR027417 IPR036277 IPR041738 PF02463 PF06470 PIRSF005719 PTHR43939 PTHR43939:SF1 SM00968 SSF52540 SSF75553 cd03274 mobidb-lite	20
LotjaGi4g1v0139100.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp\|Q9FJL0\|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr\|A0A151RK13\|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR024704 IPR027417 IPR036277 IPR041738 PF02463 PF06470 PIRSF005719 PTHR43939 PTHR43939:SF1 SM00968 SSF52540 SSF75553 cd03274 mobidb-lite	20
LotjaGi4g1v0139100.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp\|Q9FJL0\|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr\|K7LXH6\|K7LXH6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0139100	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR024704 IPR027417 IPR036277 IPR041738 PF02463 PF06470 PIRSF005719 PTHR43939 PTHR43939:SF1 SM00968 SSF52540 SSF75553 cd03274 mobidb-lite	20
LotjaGi4g1v0139100.7 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT5G48600.1 structural maintenance of chromosome 3; Swiss-Prot: sp\|Q9FJL0\|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr\|A0A0R0I695\|A0A0R0I695_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0139100	Domains G3DSA:3.40.50.300 IPR003395 IPR027417 PF02463 PTHR43939 PTHR43939:SF1 SSF52540	7
LotjaGi4g1v0139100.8 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT5G48600.1 structural maintenance of chromosome 3; Swiss-Prot: sp\|Q9FJL0\|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr\|A0A151RK13\|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100	Domains G3DSA:3.40.50.300 IPR003395 IPR027417 IPR041738 PF02463 PTHR43939 PTHR43939:SF1 SSF52540 cd03274	9
LotjaGi5g1v0181700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q6Q1P4\|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr\|A0A0S3SRB6\|A0A0S3SRB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027417 IPR028468 PF02463 PTHR18937 PTHR18937:SF12 SSF52540 SSF57997 cd03275 mobidb-lite	12
LotjaGi5g1v0181700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q6Q1P4\|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr\|A0A0S3SRB6\|A0A0S3SRB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027417 IPR028468 PF02463 PTHR18937 PTHR18937:SF12 SSF52540 SSF57997 cd03275 mobidb-lite	12
LotjaGi5g1v0181700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q6Q1P4\|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr\|A0A0B2P8J7\|A0A0B2P8J7_GLYSO Structural maintenance of chromosomes protein; Found in the gene: LotjaGi5g1v0181700	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR024704 IPR027417 IPR028468 IPR036277 PF02463 PF06470 PIRSF005719 PTHR18937 PTHR18937:SF12 SM00968 SSF52540 SSF57997 SSF75553 cd03275 mobidb-lite	21
LotjaGi5g1v0181700.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q6Q1P4\|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr\|I1LYK3\|I1LYK3_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi5g1v0181700	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 IPR028468 IPR036277 PF02463 PF06470 PTHR18937 PTHR18937:SF12 SM00968 SSF52540 SSF75553 cd03275	17
LotjaGi5g1v0181700.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q6Q1P4\|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr\|A0A0S3SR98\|A0A0S3SR98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 IPR028468 IPR036277 NON_CYTOPLASMIC_DOMAIN PF02463 PF06470 PTHR18937 PTHR18937:SF12 SM00968 SSF52540 SSF75553 TRANSMEMBRANE cd03275	20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd03275	CDD	1	3.03