Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR003395 is a RecF/RecN/SMC, N-terminal.
<p>This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [[cite:PUB00007543]]. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics [[cite:PUB00020349]]. This domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: structural maintenance of chromosomes protein 2-1-like [Cicer arietinum] gi|502158009|ref|XP_004510992.1| | 16 | ||
– | PREDICTED: structural maintenance of chromosomes protein 1-like isoform X1 [Cicer arietinum] gi|502114983|ref|XP_004495097.1| | 15 | ||
– | PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 3-like [Cicer arietinum] gi|502098061|ref|XP_004491146.1| | 10 | ||
– | PREDICTED: structural maintenance of chromosomes protein 3-like [Cucumis sativus] gi|449448840|ref|XP_004142173.1| | 10 | ||
– | PREDICTED: structural maintenance of chromosomes protein 3-like [Glycine max] gi|356554411|ref|XP_003545540.1| | 10 | ||
– | PREDICTED: structural maintenance of chromosomes protein 5-like [Glycine max] gi|356576425|ref|XP_003556332.1| | 11 | ||
– | PREDICTED: structural maintenance of chromosomes protein 5-like [Glycine max] gi|356576425|ref|XP_003556332.1| | 11 | ||
– | PREDICTED: structural maintenance of chromosomes protein 5-like [Glycine max] gi|356576425|ref|XP_003556332.1| | 12 | ||
– | PREDICTED: structural maintenance of chromosomes protein 6-like [Cicer arietinum] gi|502168978|ref|XP_004514508.1| | 14 | ||
– | PREDICTED: structural maintenance of chromosomes protein 4-like [Glycine max] gi|356573489|ref|XP_003554891.1| | 12 | ||
– | PREDICTED: structural maintenance of chromosomes protein 1A-like [Glycine max] gi|356548057|ref|XP_003542420.1| | 13 | ||
– | PREDICTED: structural maintenance of chromosomes protein 1A-like [Glycine max] gi|356548057|ref|XP_003542420.1| | 14 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT2G27170.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|I1M7D7|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060800 | 9 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|I1M7D7|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900 | 17 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|I1M7D7|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900 | 17 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|M5WT05|M5WT05_PRUPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0060900 | 9 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|I1M7D7|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900 | 23 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT5G62410.1 structural maintenance of chromosomes 2; Swiss-Prot: sp|Q9C5Y4|SMC21_ARATH Structural maintenance of chromosomes protein 2-1; TrEMBL-Plants: tr|A0A072TZX1|A0A072TZX1_MEDTR Structural maintenance of chromosomes protein; Found in the gene: LotjaGi3g1v0061500 | 22 | ||
– | Structural maintenance of chromosomes family protein; TAIR: AT5G15920.1 structural maintenance of chromosomes 5; Swiss-Prot: sp|Q9LFS8|SMC5_ARATH Structural maintenance of chromosomes protein 5; TrEMBL-Plants: tr|V7CP68|V7CP68_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0119700 | 9 | ||
– | Structural maintenance of chromosomes family protein; TAIR: AT5G07660.1 structural maintenance of chromosomes 6A; Swiss-Prot: sp|Q9FLR5|SMC6A_ARATH Structural maintenance of chromosomes protein 6A; TrEMBL-Plants: tr|A0A0S3SER5|A0A0S3SER5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0552100 | 13 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A151RK13|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100 | 20 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT5G48600.1 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|I1LWK5|I1LWK5_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi4g1v0139100 | 9 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A151RK13|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100 | 18 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A151RK13|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100 | 20 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A151RK13|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100 | 20 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|K7LXH6|K7LXH6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0139100 | 20 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT5G48600.1 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A0R0I695|A0A0R0I695_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0139100 | 7 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT5G48600.1 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A151RK13|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100 | 9 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0S3SRB6|A0A0S3SRB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700 | 12 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0S3SRB6|A0A0S3SRB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700 | 12 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0B2P8J7|A0A0B2P8J7_GLYSO Structural maintenance of chromosomes protein; Found in the gene: LotjaGi5g1v0181700 | 21 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|I1LYK3|I1LYK3_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi5g1v0181700 | 17 | ||
– | Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0S3SR98|A0A0S3SR98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700 | 20 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
cd03275 | CDD | 1 | 3.03 |