Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

cd03277

Source: CDD

Description

ABC_SMC5_euk

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 7

Transcript	Name	Description	Predicted domains	Domain count
Lj3g3v0824810.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 5-like [Glycine max] gi\|356576425\|ref\|XP_003556332.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027131 IPR027417 IPR033268 PF02463 PTHR19306 PTHR19306:SF1 SSF52540 cd03277	11
Lj3g3v0824810.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 5-like [Glycine max] gi\|356576425\|ref\|XP_003556332.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027131 IPR027417 IPR033268 PF02463 PTHR19306 PTHR19306:SF1 SSF52540 cd03277	11
Lj3g3v0824870.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 5-like [Glycine max] gi\|356576425\|ref\|XP_003556332.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027131 IPR027417 IPR033268 PF02463 PTHR19306 PTHR19306:SF1 SSF52540 cd03277 mobidb-lite	12
LotjaGi3g1v0119400_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes family protein; TAIR: AT5G15920.1 structural maintenance of chromosomes 5; Swiss-Prot: sp\|Q9LFS8\|SMC5_ARATH Structural maintenance of chromosomes protein 5; TrEMBL-Plants: tr\|A0A0S3QXY9\|A0A0S3QXY9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0119400_LC	Domains Coil G3DSA:3.40.50.300 IPR027131 IPR027417 PTHR45916 SSF52540 cd03277	7
LotjaGi3g1v0119400_LC.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes family protein; TAIR: AT5G15920.1 structural maintenance of chromosomes 5; Swiss-Prot: sp\|Q9LFS8\|SMC5_ARATH Structural maintenance of chromosomes protein 5; TrEMBL-Plants: tr\|G7JE71\|G7JE71_MEDTR Structural maintenance-like chromosomes-protein; Found in the gene: LotjaGi3g1v0119400_LC	Domains G3DSA:3.40.50.300 IPR027131 IPR027417 PTHR45916 SSF52540 cd03277	6
LotjaGi3g1v0119500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes family protein; TAIR: AT5G15920.1 structural maintenance of chromosomes 5; Swiss-Prot: sp\|Q9LFS8\|SMC5_ARATH Structural maintenance of chromosomes protein 5; TrEMBL-Plants: tr\|G7J0X6\|G7J0X6_MEDTR Structural maintenance-like chromosomes-protein; Found in the gene: LotjaGi3g1v0119500_LC	Domains Coil G3DSA:3.40.50.300 IPR027131 IPR027417 IPR038729 PF13476 PTHR45916 SSF52540 cd03277	9
LotjaGi3g1v0119700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes family protein; TAIR: AT5G15920.1 structural maintenance of chromosomes 5; Swiss-Prot: sp\|Q9LFS8\|SMC5_ARATH Structural maintenance of chromosomes protein 5; TrEMBL-Plants: tr\|V7CP68\|V7CP68_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0119700	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027131 IPR027417 PF02463 PTHR45916 SSF52540 cd03277	9

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd03277	CDD	1	14.29