Domain Predictions — View

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cd09122

Source: CDD

Description

PLDc_Tdp1_1

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 8

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v3597270.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: tyrosyl-DNA phosphodiesterase 1-like isoform X1 [Cicer arietinum] gi\|502103206\|ref\|XP_004492226.1\|	Domains G3DSA:2.60.200.20 G3DSA:3.30.870.10 G3DSA:3.30.870.20 IPR000253 IPR008984 IPR010347 IPR027415 PF00498 PF06087 PTHR12415 PTHR12415:SF0 SSF49879 SSF56024 cd00060 cd09122	15
Lj4g3v1287420.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Tyrosyl-DNA phosphodiesterase [Medicago truncatula] gi\|357520291\|ref\|XP_003630434.1\|	Domains Coil G3DSA:3.30.870.10 G3DSA:3.30.870.20 IPR010347 IPR014905 IPR027415 PF06087 PF08797 PS51257 PTHR12415 PTHR12415:SF2 SM00910 SSF56024 cd09122 cd09123	15
Lj4g3v1287420.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Tyrosyl-DNA phosphodiesterase [Medicago truncatula] gi\|357520291\|ref\|XP_003630434.1\|	Domains Coil G3DSA:2.60.200.20 G3DSA:3.30.870.10 G3DSA:3.30.870.20 IPR000253 IPR008984 IPR010347 IPR014905 IPR027415 PF00498 PF06087 PF08797 PS50006 PTHR12415 PTHR12415:SF2 SM00910 SSF49879 SSF56024 cd00060 cd09122 cd09123	21
Lj4g3v2860600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Tyrosyl-DNA phosphodiesterase [Medicago truncatula] gi\|357520291\|ref\|XP_003630434.1\|	Domains Coil G3DSA:3.30.870.10 G3DSA:3.30.870.20 IPR010347 IPR014905 IPR027415 PF06087 PF08797 PS51257 PTHR12415 PTHR12415:SF2 SM00910 SSF56024 cd09122 cd09123	15
Lj4g3v2860600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Tyrosyl-DNA phosphodiesterase [Medicago truncatula] gi\|357520291\|ref\|XP_003630434.1\|	Domains Coil G3DSA:3.30.870.10 G3DSA:3.30.870.20 IPR010347 IPR014905 IPR027415 PF06087 PF08797 PTHR12415 PTHR12415:SF2 SM00910 SSF56024 cd09122 cd09123	14
LotjaGi1g1v0596400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Tyrosyl-DNA phosphodiesterase 1; TAIR: AT5G15170.1 tyrosyl-DNA phosphodiesterase-like protein; Swiss-Prot: sp\|Q8H1D9\|TYDP1_ARATH Tyrosyl-DNA phosphodiesterase 1; TrEMBL-Plants: tr\|G7KVX8\|G7KVX8_MEDTR Tyrosyl-DNA phosphodiesterase; Found in the gene: LotjaGi1g1v0596400	Domains G3DSA:2.60.200.20 G3DSA:3.30.870.10 G3DSA:3.30.870.20 IPR000253 IPR008984 IPR010347 IPR027415 IPR041388 PF06087 PF17913 PTHR12415 PTHR12415:SF0 SSF49879 SSF56024 cd00060 cd09122	16
LotjaGi1g1v0596400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Tyrosyl-DNA phosphodiesterase 1; TAIR: AT5G15170.1 tyrosyl-DNA phosphodiesterase-like protein; Swiss-Prot: sp\|Q8H1D9\|TYDP1_ARATH Tyrosyl-DNA phosphodiesterase 1; TrEMBL-Plants: tr\|G7KVX8\|G7KVX8_MEDTR Tyrosyl-DNA phosphodiesterase; Found in the gene: LotjaGi1g1v0596400	Domains G3DSA:2.60.200.20 G3DSA:3.30.870.10 G3DSA:3.30.870.20 IPR000253 IPR008984 IPR010347 IPR027415 IPR041388 PF06087 PF17913 PTHR12415 PTHR12415:SF0 SSF49879 SSF56024 cd00060 cd09122	16
LotjaGi4g1v0416500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Tyrosyl-DNA phosphodiesterase 1; TAIR: AT5G07400.1 forkhead-associated domain-containing protein / FHA domain-containing protein; Swiss-Prot: sp\|Q9NUW8\|TYDP1_HUMAN Tyrosyl-DNA phosphodiesterase 1; TrEMBL-Plants: tr\|G7LGI2\|G7LGI2_MEDTR Tyrosyl-DNA phosphodiesterase; Found in the gene: LotjaGi4g1v0416500	Domains Coil G3DSA:3.30.870.10 G3DSA:3.30.870.20 IPR000253 IPR008984 IPR010347 IPR014905 IPR027415 PF00498 PF06087 PF08797 PS50006 PTHR12415 PTHR12415:SF3 SM00240 SM00910 SSF49879 SSF56024 cd00060 cd09122 cd09123	21

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd09123	CDD	1	12.50