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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2860600 |
| Transcript ID | Lj4g3v2860600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Tyrosyl-DNA phosphodiesterase [Medicago truncatula] gi|357520291|ref|XP_003630434.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 18 | 18 | 5 | – | |
| PANTHER | 1 | 189 | 189 | 3.90E-241 | – | |
| PANTHER | 1 | 189 | 189 | 3.90E-241 | ||
| CDD | 2 | 142 | 141 | 1.08E-25 | – | |
| Gene3D | 5 | 168 | 164 | 3.60E-31 | – | |
| SUPERFAMILY | 8 | 167 | 160 | 3.14E-25 | – | |
| Pfam | 62 | 181 | 120 | 3.60E-18 | ||
| Pfam | 197 | 313 | 117 | 1.10E-17 | ||
| SMART | 197 | 322 | 126 | 0.003 | ||
| SUPERFAMILY | 346 | 607 | 262 | 8.63E-41 | – | |
| Gene3D | 347 | 610 | 264 | 1.70E-63 | ||
| PANTHER | 351 | 662 | 312 | 3.90E-241 | ||
| PANTHER | 351 | 662 | 312 | 3.90E-241 | – | |
| Pfam | 353 | 589 | 237 | 2.00E-24 | ||
| CDD | 358 | 557 | 200 | 6.62E-38 | – | |
| Coils | 594 | 645 | 52 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | Phosphoric diester hydrolase activity | Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. |
Expression pattern of Lj4g3v2860600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2860600.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.