Domain Predictions — View

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cd15845

Source: CDD

Description

SNARE_syntaxin16

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0060129.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: syntaxin-43-like [Glycine max] gi\|356576833\|ref\|XP_003556534.1\|	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.20.58.70 IPR000727 IPR006011 IPR006012 IPR010989 NON_CYTOPLASMIC_DOMAIN PF05739 PS00914 PS50192 PTHR19957 PTHR19957:SF108 SM00397 SM00503 SSF47661 SignalP-TM_GRAM_POSITIVE TMhelix TRANSMEMBRANE cd15845	20
Lj1g3v4863130.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: syntaxin-43-like [Cicer arietinum] gi\|502112650\|ref\|XP_004494399.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.58.70 IPR000727 IPR006011 IPR006012 IPR010989 NON_CYTOPLASMIC_DOMAIN PF05739 PS00914 PS50192 PTHR19957 PTHR19957:SF108 SM00397 SM00503 SSF47661 SignalP-TM_GRAM_POSITIVE TMhelix TRANSMEMBRANE cd15845 mobidb-lite	20
LotjaGi1g1v0761800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Syntaxin, putative; TAIR: AT3G05710.2 syntaxin of plants 43; Swiss-Prot: sp\|Q9SUJ1\|SYP43_ARATH Syntaxin-43; TrEMBL-Plants: tr\|C6TBP9\|C6TBP9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0761800	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.5.110 G3DSA:1.20.58.70 IPR000727 IPR006011 IPR006012 IPR010989 NON_CYTOPLASMIC_DOMAIN PF05739 PS00914 PS50192 PTHR19957 PTHR19957:SF270 SM00397 SM00503 SSF47661 SignalP-TM TMhelix TRANSMEMBRANE cd15845 mobidb-lite	21
LotjaGi5g1v0228300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Syntaxin, putative; TAIR: AT3G05710.2 syntaxin of plants 43; Swiss-Prot: sp\|Q9SUJ1\|SYP43_ARATH Syntaxin-43; TrEMBL-Plants: tr\|A0A151U526\|A0A151U526_CAJCA Syntaxin-43; Found in the gene: LotjaGi5g1v0228300	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.20.5.110 G3DSA:1.20.58.70 IPR000727 IPR006011 IPR006012 IPR010989 NON_CYTOPLASMIC_DOMAIN PF05739 PS00914 PS50192 PTHR19957 PTHR19957:SF260 SM00397 SM00503 SSF47661 SignalP-TM TMhelix TRANSMEMBRANE cd15845	21
LotjaGi5g1v0228300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Syntaxin, putative; TAIR: AT3G05710.2 syntaxin of plants 43; Swiss-Prot: sp\|Q9SUJ1\|SYP43_ARATH Syntaxin-43; TrEMBL-Plants: tr\|A0A151U526\|A0A151U526_CAJCA Syntaxin-43; Found in the gene: LotjaGi5g1v0228300	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.20.5.110 G3DSA:1.20.58.70 IPR000727 IPR006011 IPR006012 IPR010989 NON_CYTOPLASMIC_DOMAIN PF05739 PS00914 PS50192 PTHR19957 PTHR19957:SF260 SM00397 SM00503 SSF47661 SignalP-TM TMhelix TRANSMEMBRANE cd15845	21
LotjaGi5g1v0228300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Syntaxin, putative; TAIR: AT3G05710.1 syntaxin of plants 43; Swiss-Prot: sp\|Q9SUJ1\|SYP43_ARATH Syntaxin-43; TrEMBL-Plants: tr\|A0A0L9TY73\|A0A0L9TY73_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0228300	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.58.70 IPR000727 IPR006012 IPR010989 NON_CYTOPLASMIC_DOMAIN PF05739 PS00914 PS50192 PTHR19957 PTHR19957:SF260 SM00397 SSF47661 TMhelix TRANSMEMBRANE cd15845	16

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd15845	CDD	1	16.67