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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0228300 |
| Transcript ID | LotjaGi5g1v0228300.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Syntaxin, putative; TAIR: AT3G05710.2 syntaxin of plants 43; Swiss-Prot: sp|Q9SUJ1|SYP43_ARATH Syntaxin-43; TrEMBL-Plants: tr|A0A151U526|A0A151U526_CAJCA Syntaxin-43; Found in the gene: LotjaGi5g1v0228300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53546757..53551040) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGACTCGGAATCGCACTTTGCTTTTCCGAAAGCACCGAGACGCATTGAAGAGCGTCCGATTCCCCTCCTCCTCTTC GCCGCCCTCCGCCGCCGCCGGCCCCGTCATCGAATTGGTCAGCACCTCGCTTCTCAATCCCAATCGCTCTTACACTCCGC TTAGCACAGAGGATCCCGCTAATTCAAGGTTCGCTTCACAGATCTCACAATCTCATCTTCAATTGCCTTAGATCCATTGG ATGAAATTGAGTTAAATTTGTTAGAAGTCCCACATTGGCTAGAGATAGAGCATAGATAGCCTTTATAAGGGCAGTGCAAA CCTCAACTATTGTGCTAGCTTTTGTGGTTGAGTATAGGTCTCCCGATTTGTAATTAGATTTTATGTTGTTCATTGGTTTA TGGATACAGTAAGGGTGCTATTCCAATTACTGTGGGGTTACCGCCGGCGTGGGTGGATGTATCTGAAGAGATATCAGCAA ATGTGCAACGGGCGCGATCGAAAATGGCGGAGTTGGCTAAGGCTCACGCGAAGGCGTTAATGCCGTCGTTTGGAGATGGT AAGGAGGATCAGCATGCGATTGAATCGCTAACTTATGAGATAACTGACTTGATTAAGAGATCGGAGAAGAAGCTGCGGAG ACTTTCTGCTGCTGGGCCTTCGGAGGATTCCAATGTCAGGAAAAATGTGCAGGTATTGTCACTACTGAACTGTTGCGTAA GACTCGTGATAGAAGATGGATTGAATGTGTTTTATTATTCAACTTGAATTCTGTGTGTTTTCTTGATGAACCTAGCATGA GAATTTGTGGTGGTATCACTGGTATGGTATGCTGTTTATTTTTTAGGGATAGAGAAAGAAAGTTTGTTAGAGATAAGAGA AAGAAATTTTAATTAGCAGTGGAGGTGGGGTGAATGTTTTCCAAATCAGAAAATGTAAATGGAAGCAAAGATCCAAAAAG ATTAAAAACTGCAACAAATAACTTTGAAGTGTGGCTCCAGTTTCTCTACATGTCACAAATAGAAACTCCATTTAAATAAA TGTGAGGTGTGAGCAGGCCTTAAATCAATGACCAATCAGAGTACAGACACCCTTAAGGATGTGCAGACAGAATCCTTAGA GACAGTTCCATCCCATAACATATCCAGGTGCATGCAGACACTGTTAAAGATGCATACATTTTGCTTCAACCAATTAATCT TATCTTCACACAATTCTGGCCTCCTTATATTTACCAATCCTTTAAAATACAACATGAGAAACTTCTGAAAAGTGAAATGA CTGACCCAATATTCTCCAATCTTGCCAAAGTCTTACATAAAACGCATACACGCAGAAATAGGTATACTGTATCTGATTAC TTAGTGCTGCTTAGTAAACTTCACAATATTCTTTAAACAAACCTACCAAAATAAAAATGAATCATATAGTCATTTCCAGT TTGGTTGACGTTCTTCTTACTGTCAAGCACTCAATCATACTATAGGTTTTATAATGAGCATTTTGCAAGGATATGAGCAG GAAAAGGCAAAACGATGAAGTTGATTTCTATGATTTTGATAGAACCCAGCCAAATCTGATATTATTCAATTGGTAAAACC CTAATTCCCATTAGGGAAAAGATACAAGGAAGAGATACCAAACACCCTACCTAAACCCCAGAGAGACCAACGATCTCTAA ACCTAATTTCCAAAGTGAATACAAAGATACCCACAATCTCTATAACTCCCTTATTTATATACTCACTCTCTAATTAACTC TGACCCCCAATTAACTATCTATTAACCCCTAATTAGCCACTAACCGTGAGTACCTATCAGATTCCTTTGAAAATGTGATA ATGAAAACATTGAAACGTGGTGGCATACTTGTAAATATATCTAACCCATGTTTCTTTCCTTCGAACGAGCCCTGGGTTTG GACTTTGGAGTTTCTTTGGTCATTCTTCCCGTGTCTGCTTATTGATTCTTTCTTCTCTTCCTTCATATTCTTGGCTCTTC CAGTCCTTGAGTTTTTGTGCTTTATGAAATAAGTCTGAATCTCTTGCTTTGAGCATGTTTTGGAGAAGAATACACAGGTC ATGGTCATTTATTAATTGCTCCATATTAAAAGAATCTCTTAGTTGAAAGAAAAATCGTTCGAAAACTTATGAGCAGATGT TTTCCTTTTACCCTTGCCTTACTATAATTGATGAATGGTGAAATATTCTCCAAAGTGCCTGGATTTTTGCACCCATATGA GGTTGGAAGATTTCAATGTCCATTCAATTTGTTGTTAATTGTATCTATTTTTGTTGAGATCACACATTGACTTCCAATAT GATTAAAGTAGAGTTTATAAATGCTTGAGCAATCCTTGTCTCGTGAGCTAGCTTTTGGGGTTGAGCTAAACCTAACCCAA TTTAAGATGGTATCAGAGTCTATAATAGATTCGACATTATGCCACCAACCGTAGTCCAAAAGTCAATCTGGATTCTGGCC CCATGGATTTCCATTACAATATAAAAAAATCAATTCTATAATCTCAACATTACAGATGTCCAATCCTGGGTGTGGGGAGG GGTATATTGAGATACCACATTGACTAGAGATCTTCACTAAGTAGAGCTTTTAAAGGATTGGGCAATCCTCACCTCATGAT CTAGTTTATGGGGCCGATTTAAGCCTTGTCCAGGTTTAAGACCTTCCTTTCTTAGCCATGAAGCGGGCTTGGTTTTTTAT CCATGAAATTGAATCTATGGTGCTGCCTTGACTTCTATCATTTAATCTTTATGTGTGAACATGGCTTTTATATTGTTTAT ATTTCATCTTATTCAAAAACTCCCTTTTAGTTGTAGCTTGTTGGACATTTTCTTAATTTGTGTGTGCACTGCATGCAGCG TTCGCTTGCTACTGACCTCCAGAACCTCTCTGTAGAGCTTCGCAAGAAACAATCAACTTATTTGAAGCGCCTCAGGCAGC AAAAAGAGGTGAGGGAAAAGCCTTTTTTCCTTGACTGACAAAGAAATAAAATTCACAATTTTATTTTCCAGTGGTTTGGT TTTCTATGGACGGTTTATTTATAGCAACTATTAAATAAGCCAAAAAAATATATGGTGCAATTTAATTTCTTCTCTGCTCA TCAAATTCTACACTCTTGATTCTAATTTAGAATACTGTGTAAAACTGCATCGCTCATGTCTTGTCACTTTCCCCCTCCCT CTTTTATGAAAATGATCTCTTGCTATTTGGTTTCATCAGCTAGTAGTCAACAAGTGATGTAAGTATACCTAGTCTTTTGT TTTATACTGAAGGAAATTGCACTGCTTACCTTGTTCCCCTGCTCTCTATCTCGTCTAACTATTATCTCAAGTCTCATGTT GTACGGGCCACCAAAATAATTAAGGCTTTTCATTTAAGCTTTTAATCACCATTTTATGTTGATGCAGGGTCAAGATGGGG TTGATCTAGAGATCAACTTAAATGGAGGAAAATCTAGATATGAAGATGATGACTTGGATAATATGGTATTCTTCCTTCCT TTTTTTCTCTGCTCACTTCTGTTCTTTTGGGGAACAGGGTGATAGTCTTATTGACGAGTTCTACTATCCATATGGTCTTA CCCAGTACGAGATGTAGTTGAGTGCTGATACTTTCAAATTATTGTATTTAGGTATTTAGTGAGCATCAGATGGCCAAACT GAAAAAAAGTGAAGCATTCACAGTAGAAAGAGAAAAAGAGATCCAACAAGTAAGCAAACGCTGCATAATACTGTTACTAA TGGCGTGTTTTGACTTAATATTTTGTACCTGCTGGACTTAATTTTTTTTTTCTTTTATAGGTTGTGGAATCTGTGAACGA GCTTGCTCAAATTATGAAAGATTTATCAGTACTAGTCATAGACCAGGTCAGCTGATACTCTCCCTCTAGGAAGTTGACAA CTTTCTTAATTCCGCACCCTTTTGAATATTGACATCCTCTATATATAGGGAACCATTGTTGATAGAATAGACTACAACAT TCAGAATGTCGCAACCACAGTTGAGGATGGCCTTAAACAGCTTCAGAAGGTCCTACTTCTCTTCCTTATCCGTTATTTTA GTGAGACCGTGCTTCAATTTCCCATCTTGCCTCTCTATCTCATTTTCGTTTTTATCTCTTCCCCCGTGACAATTATTTGG TTTACGCGACATGCAGGCAGAGAGAACTCAGAAAAAGGGGGGCATGGTAATGTGTGCTACGGTGCTTCTTATCATGTGCT TTGTTATGTTGGTTCTCTTGGTCATTAAGGAAATTATTTTGTGA
CDS sequence (LotjaGi5g1v0228300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACTCGGAATCGCACTTTGCTTTTCCGAAAGCACCGAGACGCATTGAAGAGCGTCCGATTCCCCTCCTCCTCTTC GCCGCCCTCCGCCGCCGCCGGCCCCGTCATCGAATTGGTCAGCACCTCGCTTCTCAATCCCAATCGCTCTTACACTCCGC TTAGCACAGAGGATCCCGCTAATTCAAGGTTCGGTGCTATTCCAATTACTGTGGGGTTACCGCCGGCGTGGGTGGATGTA TCTGAAGAGATATCAGCAAATGTGCAACGGGCGCGATCGAAAATGGCGGAGTTGGCTAAGGCTCACGCGAAGGCGTTAAT GCCGTCGTTTGGAGATGGTAAGGAGGATCAGCATGCGATTGAATCGCTAACTTATGAGATAACTGACTTGATTAAGAGAT CGGAGAAGAAGCTGCGGAGACTTTCTGCTGCTGGGCCTTCGGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTTCGCTT GCTACTGACCTCCAGAACCTCTCTGTAGAGCTTCGCAAGAAACAATCAACTTATTTGAAGCGCCTCAGGCAGCAAAAAGA GGGTCAAGATGGGGTTGATCTAGAGATCAACTTAAATGGAGGAAAATCTAGATATGAAGATGATGACTTGGATAATATGG TATTTAGTGAGCATCAGATGGCCAAACTGAAAAAAAGTGAAGCATTCACAGTAGAAAGAGAAAAAGAGATCCAACAAGTT GTGGAATCTGTGAACGAGCTTGCTCAAATTATGAAAGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTTGATAG AATAGACTACAACATTCAGAATGTCGCAACCACAGTTGAGGATGGCCTTAAACAGCTTCAGAAGGCAGAGAGAACTCAGA AAAAGGGGGGCATGGTAATGTGTGCTACGGTGCTTCTTATCATGTGCTTTGTTATGTTGGTTCTCTTGGTCATTAAGGAA ATTATTTTGTGA
Protein sequence (LotjaGi5g1v0228300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATRNRTLLFRKHRDALKSVRFPSSSSPPSAAAGPVIELVSTSLLNPNRSYTPLSTEDPANSRFGAIPITVGLPPAWVDV SEEISANVQRARSKMAELAKAHAKALMPSFGDGKEDQHAIESLTYEITDLIKRSEKKLRRLSAAGPSEDSNVRKNVQRSL ATDLQNLSVELRKKQSTYLKRLRQQKEGQDGVDLEINLNGGKSRYEDDDLDNMVFSEHQMAKLKKSEAFTVEREKEIQQV VESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLLIMCFVMLVLLVIKE IIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 296 | 296 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 32 | 32 | - | – | |
| PANTHER | 16 | 317 | 302 | 1.3E-146 | – | |
| PANTHER | 16 | 317 | 302 | 1.3E-146 | – | |
| SMART | 68 | 183 | 116 | 5.1E-18 | ||
| SUPERFAMILY | 73 | 282 | 210 | 1.73E-40 | ||
| Gene3D | 74 | 189 | 116 | 4.9E-8 | – | |
| Coils | 81 | 101 | 21 | - | – | |
| Gene3D | 215 | 322 | 108 | 8.4E-27 | – | |
| SMART | 222 | 289 | 68 | 4.6E-12 | ||
| ProSiteProfiles | 227 | 289 | 63 | 16.616 | ||
| CDD | 232 | 288 | 57 | 5.76643E-28 | – | |
| ProSitePatterns | 233 | 272 | 40 | - | ||
| Pfam | 263 | 315 | 53 | 3.7E-16 | ||
| TMHMM | 296 | 318 | 23 | - | – | |
| Phobius | 297 | 318 | 22 | - | – | |
| Phobius | 319 | 323 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | SNAP receptor activity | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi5g1v0228300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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