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IPR006011 is a Syntaxin, N-terminal domain.
<p>Syntaxins are the prototype family of SNARE proteins. They usually consist of three main regions - a C-terminal transmembrane region, a central SNARE domain which is characteristic of and conserved in all syntaxins [interpro:IPR000727], and an N-terminal domain that is featured in this entry. This domain varies between syntaxin isoforms; in syntaxin 1A ([swissprot:O35526]) it is found as three α-helices with a left-handed twist. It may fold back on the SNARE domain to allow the molecule to adopt a 'closed' configuration that prevents formation of the core fusion complex - it thus has an auto-inhibitory role.</p> <p>The function of syntaxins is determined by their localisation. They are involved in neuronal exocytosis, ER-Golgi transport and Golgi-endosome transport, for example. They also interact with other proteins as well as those involved in SNARE complexes. These include vesicle coat proteins, Rab GTPases, and tethering factors [[cite:PUB00020397]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Syntaxin-132 [Medicago truncatula] gi|357453477|ref|XP_003597016.1| | 20 | ||
| – | PREDICTED: syntaxin-43-like [Glycine max] gi|356576833|ref|XP_003556534.1| | 20 | ||
| – | PREDICTED: syntaxin-related protein KNOLLE-like [Cicer arietinum] gi|502160171|ref|XP_004511657.1| | 9 | ||
| – | PREDICTED: syntaxin-related protein KNOLLE-like [Glycine max] gi|356559528|ref|XP_003548051.1| | 18 | ||
| – | PREDICTED: syntaxin-32-like [Glycine max] gi|356515506|ref|XP_003526441.1| | 15 | ||
| – | PREDICTED: syntaxin-132-like [Cicer arietinum] gi|502092006|ref|XP_004489690.1| | 8 | ||
| – | Syntaxin-22 [Medicago truncatula] gi|357508487|ref|XP_003624532.1| | 18 | ||
| – | PREDICTED: syntaxin-43-like [Cicer arietinum] gi|502112650|ref|XP_004494399.1| | 20 | ||
| – | PREDICTED: LOW QUALITY PROTEIN: syntaxin-112-like [Cicer arietinum] gi|502161166|ref|XP_004512058.1| | 20 | ||
| – | PREDICTED: syntaxin-124-like [Cicer arietinum] gi|502077674|ref|XP_004485712.1| | 10 | ||
| – | PREDICTED: syntaxin-22-like [Glycine max] gi|356496277|ref|XP_003516995.1| | 21 | ||
| – | PREDICTED: syntaxin-121-like [Cicer arietinum] gi|502122236|ref|XP_004497646.1| | 21 | ||
| – | Syntaxin-121 [Medicago truncatula] gi|357440101|ref|XP_003590328.1| | 22 | ||
| – | PREDICTED: syntaxin-43-like [Glycine max] gi|356576833|ref|XP_003556534.1| | 10 | ||
| – | PREDICTED: syntaxin-124-like [Cicer arietinum] gi|502077674|ref|XP_004485712.1| | 21 | ||
| – | Syntaxin-like protein; TAIR: AT5G46860.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|P93654|SYP22_ARATH Syntaxin-22; TrEMBL-Plants: tr|I3S6S6|I3S6S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0636300 | 19 | ||
| – | Syntaxin, putative; TAIR: AT3G05710.2 syntaxin of plants 43; Swiss-Prot: sp|Q9SUJ1|SYP43_ARATH Syntaxin-43; TrEMBL-Plants: tr|C6TBP9|C6TBP9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0761800 | 21 | ||
| – | Syntaxin, putative; TAIR: AT1G08560.1 syntaxin of plants 111; Swiss-Prot: sp|Q42374|SY111_ARATH Syntaxin-related protein KNOLLE; TrEMBL-Plants: tr|V7C3E5|V7C3E5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0104900 | 22 | ||
| – | Syntaxin, putative; TAIR: AT1G08560.1 syntaxin of plants 111; Swiss-Prot: sp|Q42374|SY111_ARATH Syntaxin-related protein KNOLLE; TrEMBL-Plants: tr|V7C3E5|V7C3E5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0104900 | 22 | ||
| – | Syntaxin; TAIR: AT5G46860.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|P93654|SYP22_ARATH Syntaxin-22; TrEMBL-Plants: tr|I1J4T0|I1J4T0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0335500 | 19 | ||
| – | Syntaxin, putative; TAIR: AT2G18260.1 syntaxin of plants 112; Swiss-Prot: sp|Q9ZPV9|SY112_ARATH Syntaxin-112; TrEMBL-Plants: tr|V7CHX3|V7CHX3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0388600 | 25 | ||
| – | Syntaxin, putative; TAIR: AT2G18260.1 syntaxin of plants 112; Swiss-Prot: sp|Q9ZPV9|SY112_ARATH Syntaxin-112; TrEMBL-Plants: tr|A0A1J7FX73|A0A1J7FX73_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388600 | 20 | ||
| – | Syntaxin, putative; TAIR: AT3G03800.1 syntaxin of plants 131; Swiss-Prot: sp|Q9SRV7|SY131_ARATH Putative syntaxin-131; TrEMBL-Plants: tr|I3SMC6|I3SMC6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0190600 | 21 | ||
| – | Syntaxin, putative; TAIR: AT3G03800.1 syntaxin of plants 131; Swiss-Prot: sp|Q9SRV7|SY131_ARATH Putative syntaxin-131; TrEMBL-Plants: tr|G7IKJ7|G7IKJ7_MEDTR Syntaxin of plants 122 protein; Found in the gene: LotjaGi3g1v0190600 | 21 | ||
| – | Syntaxin, putative; TAIR: AT1G61290.1 syntaxin of plants 124; Swiss-Prot: sp|O64791|SY124_ARATH Syntaxin-124; TrEMBL-Plants: tr|G7ILD5|G7ILD5_MEDTR Syntaxin of plants 122 protein; Found in the gene: LotjaGi4g1v0050100 | 22 | ||
| – | Syntaxin; TAIR: AT5G46860.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|P93654|SYP22_ARATH Syntaxin-22; TrEMBL-Plants: tr|I3SK89|I3SK89_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0169100 | 21 | ||
| – | Syntaxin, putative; TAIR: AT3G11820.1 syntaxin of plants 121; Swiss-Prot: sp|Q9ZSD4|SY121_ARATH Syntaxin-121; TrEMBL-Plants: tr|A0A1J7FR38|A0A1J7FR38_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0106300 | 21 | ||
| – | Syntaxin, putative; TAIR: AT3G11820.1 syntaxin of plants 121; Swiss-Prot: sp|Q9ZSD4|SY121_ARATH Syntaxin-121; TrEMBL-Plants: tr|B7FI20|B7FI20_MEDTR Syntaxin of plants 122 protein; Found in the gene: LotjaGi5g1v0106400 | 23 | ||
| – | Syntaxin, putative; TAIR: AT3G05710.2 syntaxin of plants 43; Swiss-Prot: sp|Q9SUJ1|SYP43_ARATH Syntaxin-43; TrEMBL-Plants: tr|A0A151U526|A0A151U526_CAJCA Syntaxin-43; Found in the gene: LotjaGi5g1v0228300 | 21 | ||
| – | Syntaxin, putative; TAIR: AT3G05710.2 syntaxin of plants 43; Swiss-Prot: sp|Q9SUJ1|SYP43_ARATH Syntaxin-43; TrEMBL-Plants: tr|A0A151U526|A0A151U526_CAJCA Syntaxin-43; Found in the gene: LotjaGi5g1v0228300 | 21 | ||
| – | Syntaxin, putative; TAIR: AT3G05710.2 syntaxin of plants 43; Swiss-Prot: sp|Q9SUJ1|SYP43_ARATH Syntaxin-43; TrEMBL-Plants: tr|A0A151U526|A0A151U526_CAJCA Syntaxin-43; Found in the gene: LotjaGi5g1v0228300 | 17 | ||
| – | Syntaxin, putative; TAIR: AT1G61290.1 syntaxin of plants 124; Swiss-Prot: sp|O64791|SY124_ARATH Syntaxin-124; TrEMBL-Plants: tr|G7ILD5|G7ILD5_MEDTR Syntaxin of plants 122 protein; Found in the gene: LotjaGi6g1v0338200 | 22 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd15848 | CDD | 1 | 3.13 |