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GO:0005665

View this GO term in other databases

Overview

Field Value
Namespace Cellular component
Short description RNA polymerase II, core complex
Full defintion RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
Subterm of

Relationships

The relationship of GO:0005665 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCmtg_sensu

Associated Lotus transcripts 13

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj2g3v1549640.1
– PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC2-like [Glycine max] gi|356535896|ref|XP_003536478.1|
GO terms
4
Lj2g3v1659630.1
– PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer arietinum] gi|502161489|ref|XP_004512182.1|
GO terms
3
Lj2g3v2959620.1
– PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC2-like [Glycine max] gi|356535896|ref|XP_003536478.1|
GO terms
4
LotjaGi1g1v0057700.1
– DNA-directed RNA polymerase II family protein; TAIR: AT5G51940.1 RNA polymerase Rpb6; Swiss-Prot: sp|Q9FJ98|RPD6A_ARATH DNA-directed RNA polymerases II, IV and V subunit 6A; TrEMBL-Plants: tr|I3RZV1|I3RZV1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0057700
GO terms
4
LotjaGi2g1v0343700.1
– DNA-directed RNA polymerase II family protein; TAIR: AT5G51940.1 RNA polymerase Rpb6; Swiss-Prot: sp|Q9FJ98|RPD6A_ARATH DNA-directed RNA polymerases II, IV and V subunit 6A; TrEMBL-Plants: tr|I3RZV1|I3RZV1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0343700
GO terms
4
LotjaGi2g1v0377500.1
– DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500
GO terms
3
LotjaGi2g1v0377500.2
– DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500
GO terms
3
LotjaGi2g1v0377500.3
– DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500
GO terms
3
LotjaGi2g1v0377500.4
– DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500
GO terms
3
LotjaGi2g1v0377500.5
– DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500
GO terms
3
LotjaGi3g1v0550300.1
– DNA-directed RNA polymerase; TAIR: AT3G52090.1 DNA-directed RNA polymerase, RBP11-like protein; Swiss-Prot: sp|Q38859|NRPBB_ARATH DNA-directed RNA polymerases II, IV and V subunit 11; TrEMBL-Plants: tr|I3T213|I3T213_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0550300
GO terms
3
LotjaGi3g1v0550300.2
– DNA-directed RNA polymerase; TAIR: AT3G52090.1 DNA-directed RNA polymerase, RBP11-like protein; Swiss-Prot: sp|Q38859|NRPBB_ARATH DNA-directed RNA polymerases II, IV and V subunit 11; TrEMBL-Plants: tr|I3T213|I3T213_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0550300
GO terms
3
LotjaGi3g1v0550300.3
– DNA-directed RNA polymerase; TAIR: AT3G52090.1 DNA-directed RNA polymerase, RBP11-like protein; Swiss-Prot: sp|Q38859|NRPBB_ARATH DNA-directed RNA polymerases II, IV and V subunit 11; TrEMBL-Plants: tr|I3T213|I3T213_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0550300
GO terms
3

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0006366
Biological process Transcription by RNA polymerase II 1 7.69