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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1659630 |
| Transcript ID | Lj2g3v1659630.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer arietinum] gi|502161489|ref|XP_004512182.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 1466 | 1465 | 0 | – | |
| PANTHER | 2 | 1466 | 1465 | 0 | – | |
| SUPERFAMILY | 6 | 1469 | 1464 | 0 | – | |
| Pfam | 14 | 350 | 337 | 7.70E-110 | ||
| CDD | 18 | 871 | 854 | 0 | – | |
| MobiDBLite | 152 | 173 | 22 | – | – | |
| SMART | 242 | 548 | 307 | 1.10E-198 | ||
| Pfam | 352 | 520 | 169 | 3.50E-71 | ||
| Gene3D | 357 | 384 | 28 | 4.20E-41 | – | |
| Gene3D | 385 | 449 | 65 | 8.60E-25 | – | |
| Gene3D | 451 | 522 | 72 | 4.20E-41 | – | |
| Pfam | 524 | 687 | 164 | 9.60E-48 | ||
| Coils | 694 | 721 | 28 | – | – | |
| Pfam | 714 | 818 | 105 | 3.30E-39 | ||
| Pfam | 825 | 1415 | 591 | 2.80E-105 | ||
| Pfam | 891 | 1075 | 185 | 1.00E-66 | ||
| Coils | 944 | 964 | 21 | – | – | |
| CDD | 1054 | 1466 | 413 | 0 | – | |
| Pfam | 1160 | 1294 | 135 | 2.40E-53 | ||
| MobiDBLite | 1538 | 1834 | 297 | – | – | |
| PRINTS | 1540 | 1556 | 17 | 4.50E-09 | – | |
| Pfam | 1551 | 1564 | 14 | 0.077 | ||
| Pfam | 1565 | 1578 | 14 | 0.0022 | ||
| PRINTS | 1569 | 1590 | 22 | 4.50E-09 | – | |
| ProSitePatterns | 1578 | 1584 | 7 | – | ||
| Pfam | 1579 | 1592 | 14 | 1 | ||
| ProSitePatterns | 1592 | 1598 | 7 | – | ||
| Pfam | 1593 | 1606 | 14 | 0.024 | ||
| PANTHER | 1593 | 1670 | 78 | 0 | – | |
| PANTHER | 1593 | 1670 | 78 | 0 | – | |
| PRINTS | 1597 | 1613 | 17 | 4.50E-09 | – | |
| ProSitePatterns | 1599 | 1605 | 7 | – | ||
| ProSitePatterns | 1606 | 1612 | 7 | – | ||
| Pfam | 1607 | 1620 | 14 | 0.42 | ||
| ProSitePatterns | 1613 | 1619 | 7 | – | ||
| PRINTS | 1614 | 1631 | 18 | 4.50E-09 | – | |
| ProSitePatterns | 1620 | 1626 | 7 | – | ||
| Pfam | 1621 | 1634 | 14 | 0.39 | ||
| ProSitePatterns | 1627 | 1633 | 7 | – | ||
| PRINTS | 1632 | 1657 | 26 | 4.50E-09 | – | |
| ProSitePatterns | 1634 | 1640 | 7 | – | ||
| Pfam | 1635 | 1648 | 14 | 0.016 | ||
| ProSitePatterns | 1641 | 1647 | 7 | – | ||
| ProSitePatterns | 1648 | 1654 | 7 | – | ||
| Pfam | 1649 | 1662 | 14 | 0.09 | ||
| ProSitePatterns | 1655 | 1661 | 7 | – | ||
| ProSitePatterns | 1662 | 1668 | 7 | – | ||
| Pfam | 1663 | 1676 | 14 | 1.6 | ||
| ProSitePatterns | 1669 | 1675 | 7 | – | ||
| ProSitePatterns | 1676 | 1682 | 7 | – | ||
| Pfam | 1677 | 1690 | 14 | 1.6 | ||
| ProSitePatterns | 1683 | 1689 | 7 | – | ||
| ProSitePatterns | 1690 | 1696 | 7 | – | ||
| Pfam | 1691 | 1704 | 14 | 0.009 | ||
| ProSitePatterns | 1704 | 1710 | 7 | – | ||
| Pfam | 1705 | 1718 | 14 | 1.6 | ||
| ProSitePatterns | 1711 | 1717 | 7 | – | ||
| ProSitePatterns | 1718 | 1724 | 7 | – | ||
| Pfam | 1719 | 1732 | 14 | 2.1 | ||
| ProSitePatterns | 1751 | 1757 | 7 | – | ||
| Pfam | 1752 | 1765 | 14 | 7.9 | ||
| ProSitePatterns | 1765 | 1771 | 7 | – | ||
| Pfam | 1766 | 1779 | 14 | 0.84 | ||
| ProSitePatterns | 1772 | 1778 | 7 | – | ||
| Pfam | 1787 | 1800 | 14 | 7.5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed 5'-3' RNA polymerase activity | Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. | ||
| Cellular component | RNA polymerase II, core complex | RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Transcription by RNA polymerase II | The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). |
Expression pattern of Lj2g3v1659630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1659630.1, powered by CORGI.
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