Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0377500 |
| Transcript ID | LotjaGi2g1v0377500.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87475481..87483218) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATATCCGCTTCCCTTTCTCTCCGGCGGAGGTTGCCAAAGTCCGCCTCGTCCAGTTCGGAATCCTCAGCCCGGACGA GATCGTAATTTCAACTCATCACTATCTTGAATTTGAAATCAGACGCGTGCGTTCAATTGTTTTGTTGATTGGTTTTTGTT GATTGTTTTGTTGCAGAGGCAAATGTCTGTGGTGCAAATCGAGCACGGTGAGACGACGGAGAGAGGAAAACCGAAGGTTG GAGGGTTGAGCGACCCTCGCCTTGGGACTATTGACAGGAAGATGAAGTGTGAGACGTGTACTGCTAGTATGGCTGAGTGT CCTGGTCACTTTGGCCACTTGGAGCTTGCGAAACCTATGTTTCACATCGGGTTCTTGAAGACTGTGTTGACTATCATGCG TTGTGTTTGCTTTAACTGCTCTAAAATTCTAGCAGATGAGGTACTTTGGCACTCATTGCCCCTTTGAGAATTCAGAATGT GCTTTTCTTGATACCAACTTGATTAGCTGTTTGTCCCGTCGCGAGGAAACACGCAAATTTGAGTTCTGTTGGCAATGATT ATCAATTTGAACCAAGTTAAATTGCAATAATGAACTTGGTTGATTACCAACTTGATTTTTATCTGAATTCTTATGGTATG TTTTGGTACATAACCTAACTAAATGCATTTATTCAGTTATTGCTCGTCACGTGAGAGCTTAGAGATATTTTGTCATGAGC TAAATCTTGTCATAAGCTCAAAAGAACATATAGTTAGATACCAAGATTATAAGCTAATTTCGTAAGCTTTGGAGTACTCG AGTCCTTAAGTAGTAAGATAAGCTCAAATAAGATCTAGATAAGCTATTCAACTGCTTTAATCTATTATTCGGTATTCTGT ATTGTAAGGGTGGGGAAGTGAATTATGATGTGTGTATTTAAATTGATCGTGGCTTTTGCAGCAAGATCATAAGTTTAAGC AAGCTTTGAGGATCAGGAATCCCAAACTTAGGCTGAGAAAAATTTTAGATGCTTGCAAAAACAAATCCAAGTGTGATGGT GGTGATGAAATTGACCTTCCTGGTCAAGATACAGAAGAGCCTCTTAAAAAGAGCCGCGGTGGCTGTGGTGCTCAGCAACC AAAGATTACTATTGAGGGGATGAAAATGATTGCTGAGTATAAAGCTCAAAGGAAGAAAAGTGATGATCAGGAACAGCTTC CTGAACCTGTAGAGAGGAAACAGACTCTGTCTGCAGAAAGGGTAATTGATCTAAATGCTGAATTTATGACGTAAACACTT CAATGTTACAGAAACTAATGTTGTTGCTGGCTTGTTAAATCTGTTGTAGGTTCTCAGTGTTCTGAAAAGGATAAGCGATG AGGACTGCCAGTTGCTAGGCTTGAATCCAAACTATGCCCGTCCTGACTGGATGATTTTACAAGTTCTTCCAATTCCTCCT CCACCTGTGAGACCTTCTGTAATGATGGACACATCCTCCAGGAGTGAGGCAAGTGTTTTCTTTTGCCGTTATTTATTACG AGTGTTAGATTTTTACAAATTTTGCAAGTTTTTGTATTTTATTACCATTTGCTGCTGATAAGGGTTACTAATATCATTTG CAATGACAATTTTTTACACTTTAATTTCATTACTAATTTTTTTGGCCTCTGTTGCATGCAGGATGATTTAACTCATCAGC TAGCCATGATCATCAGGCACAATGAGAATCTGAAGAGACAGGAGAGGAATGGATCTCCTGCACATATTATTTCAGAGTTT GCTCAGTTGTTGCAATTTCACATAGCCACATATTTTGATAATGAGTTGCCTGGATTGCCAAGGGTATAACTGTTTTTAGA GACCGGCAATTAGCACTGATATTTTCTATGCTTTCTTTAACCTTTGTTGTTTTTGAATTTTTCGTAACACATAGAACATA GAGTAATTTTTATTTATTTTTTCATAGGCTACTCAAAGATCTGGAAGGCCAATCAAATCAATCTGTAGCAGGCTTAAAGC AAAAGAAGGTCGGATTAGAGGTAACTTGATGGGGAAAAGAGTTGATTTTTCTGCTCGAACGGTAATTACACCAGACCCAA CCATTAACATCGATCAACTGGGAGTACCATGGAGTATTGCTTTGAATCTTACATACCCTGAGACTGTGACTCCATACAAT ATTGAGAGGTTGTCACTTGGATATGATTTTCTGGTTGCTTATCTATTAGTGTGCTCTATATAATATTTTTAACGAAAATA TTTGAAATGAAAAAAAAAACCATCACACAGGTTGAAGGAACTGGTTGAGTATGGACCTCATCCTCCGCCTGGAAAAACTG GTGCCAAGTATATCATTCGTGATGATGGGCAAAGGCTTGATCTCCGATATATAAAGAAAAGTAGCGATCACCATTTGGAG CTTGGATACAAGGTATTGTTTTTAAATAATGATAATTTTTTTATGTTACCTAATAATGGCTTCTAATAGTTCTTAATATT GTTGTTTTAGGTGGAGCGACATTTGAACGATGGAGACTTTGTTCTCTTCAATCGTCAGCCTAGTCTTCATAAAATGTCTA TCATGGGTCATAGAATCAAAATTATGCCTTACTCTACATTCCGGCTTAACTTGTCAGTAACTTCTCCATATAATGCTGAT TTTGATGGTGATGAAATGAACATGCATGTTCCTCAGTCATTTGAAACTAGAGCTGAGGTGTTGGAGCTGATGATGGTACC AAAATGCATAGTGTCCCCACAAGCAAATAGGCCCGTAATGGGAATTGTCCAAGATACACTCCTAGGATGCAGAAAAATCA CCAAGAGAGATACCTTCATTTCAAAGGTTATATTAAGTGAACTTTTCTTTTGTTGCACTGCAGTTTGGCTTCATGGTTGT TGCATAATTTGCTTAGCAGTCTAATGGGTGTTTTTAATTTGCAGGATGTTTTTATGAACATATTGATGTGGTGGGAAGAT TTTGACGGGAAAGTTCCTACTCCCACAATATTGAAGCCAGAACCATTGTGGACTGGGAAACAAGTTTTCAATCTTATAAT TCCTAAACCAATAAATCTGATCAGATATTCTAGCTGGCACAATGAGAGTGAAAGAGGACCCATAACCCCTGGGGATACGA TGGTTAGAATTGAAAAGGGGGAACTACTTACTGGAACTCTATGCAAAAAGACTCTTGGAACATCCACCGGAAGTCTGATT CATGTCATTTGGTATGCAGCTTCAGTATATAATTATACAAATACCTGAAAACTTGAAATTTCCACCTGAATTAGATTATT ATCGTTGTTCACCTTACAATGTTTTCTAAAAAAGAGGGGAAATTGTTTTTTTGTTGATCTTAATTGTTACTTCAAATTGA CTTTGATAAGTAATTTTCTATTCTTTTCAAGTGCTTTCTGATAGTAAAGTGTAAACTTTGAGTGGCTCTAGAAGTTGTTA CAGTTACTTCCTTTCTTCATTATTCATCGCACTGAATCTCTACTTGAATACAGGGAAGAGGTTGGCCCTGATGCAGCACG TAAATTCCTTGGGCATACTCAGTGGCTTGTAAACTACTGGCTTTTGCAGCATGCTTTTAGCATTGGAATAGGGGATACAA TTGCTGACGCTTCAACTATGGAGACTATTAATCAGACTATTTCACAAGCTAAGGAGAAAGTGAAACAACTCATCAGGGAA GCTCAAGAGAAGAAATTAGAGGCTGAACCTGGTCGGACAATGATGGAGTCTTTTGAAAATAGAGTGAACCAGGTTCTTAC TTTACATTTCTTGTCACATTGTTAGATCCAACGAATTTTGCTTTGGCATGTATCTGACGTATTATGATGCTTGATACTTT CAGACTCTGAATAAAGCTCGTGATGATGCGGGAAATAGTGCCCAAAAAAGTTTATCTGAGAGCAATAATCTGAAAGCTAT GGTGACAGCTGGTTCTAAAGGAAGTTTTATCAACATATCTCAGATGACTGCTTGTGTGGGCCAGCAGAATGTTGAGGGTA AGCGAATTCCATATGGGTTTGTAGACCGGACATTGCCTCACTTTACAAAAGATGATTATGGGCCTGAAAGTCGTGGCTTT GTGGAGAACTCATATCTTCGTGGGCTGACCCCTCAAGAGTTCTTTTTTCATGCCATGGGTGGTAGGGAAGGTCTTATTGA TACTGCAGTGAAGACATCTGAAACTGGGTACATTCAGAGGCGGCTTGTGAAGGCTATGGAGGATATCATGGTTAAGTATG ATGGCACAGTTAGGAACTCATTGGGGGATGTTATACAATTTCTCTATGGTGAAGACGGTATGGATGCTGTGTGGATAGAA ACGCAGAAGCTGGATTCACTTAAAATGAAAAAAACAGATTTTGATAGGGCTTTTAGGTATGAATTTGATGATGAATACTG GAAGCCTACTTACATGCTTGAAGAGCCTGTAGAAGACTTGAAAACGATTAGAGAATTTCGTAATGTGTTTGAGGCTGAAG TCCAAAAGCTTGAAGCTGATAGGCATCAACTTGCAACTGAAATTGCACCTACTGGTGATAGTTCTCTGCCCTTACCTGTT AACCTTAAGAGGCTTATCTGGAATGCTCAGAAGACCTTTAAGGTTGACTTCCGAAGGCCTTCTGATATGCATCCAATGGA AATTGTAGAAGCTATTGATAAGCTCCAAGAGCGACTTAAAGTGGTTCCTGGTGAGGATCTTTTAAGCCAAGAAGCTCAGA AGAATGCTACTCTCCTATTTAACATTCTGGTTCGCAGCACTTTTGCCAGTAAAAGGGTCCTGGAAGAATACAGGCTTTCT CGTGAGGCATTTGAGTGGGTTGTCGGAGAAATAGAATCAAGGTTCCTGCAATCACTTGTAGCCTCTGGTGAAATGATTGG TTGTGTGGCAGCACAATCAATTGGTGAGCCTGCTACCCAGATGACTCTCAACACTTTCCACTATGCTGGTGTCAGTGCTA AGAATGTCACCTTGGGTGTTCCCAGGTTAAGGGAAATCATTAATGTGGCTAAGAGAATTAAAACACCTTCTCTGTCTGTT TACTTGAAACCTGACGTCAGTAAAACTAAAGAGAGAGCCAAGACTGTCCAGTGTGCTTTAGAATATACCACTCTCAGGAG TGTGACTCAAGCTACAGAGGTTTGGTATGATCCCGACCCAATGAGCACAGTTATTGATGAGGATGTTGATTTCGTGAAGT CCTACTATGAAATGCCTGATGAAGAAGTTGCGCTTGAAAAAATCTCACCCTGGTTGCTTCGCATAGAATTGAATCGTGAA ATGATGGTGGATAAGAAGTTGAGTATGGCAGACATTGCTGAGAAGATTAACCTTGAATTTGATGATGATTTGACATGTAT TTTTAATGATGACAATGCTGAGAAACTTATACTTCGTATCCGTATTATGAACGCCGAAGGGCCCAAGGGAGAGATTCAGG ATGATACTGCTGAAGATGATGTTTTCTTAAAGAAAATAGAAACCAACATGCTGACTGAAATGACCTTGCGAGGTATCGCA GACATCAACAAAGTGTTTATCAAAAATACTAAAATTCAGAAGTTTGATGAGGTTGAAGGGTTTAAGCCTCATGAAGAATG GATGCTTGATACTGAAGGTGTCAACCTTCTAGCTGTAATGTGCCATGAAGATGTTGATGCATCGAGGACTACAAGCAACC ACTTGATTGAAGTTATTGAAGTTCTTGGTATTGAGGCAGTTCGGCGGTCTCTGCTGGATGAATTGCGTGTTGTCATTTCT TTTGATGGTTCTTATGTCAATTATAGGCACCTGGCTATCCTTTGTGATACCATGACTTATCGGGGACATTTGATGGCAAT TACGCGTCACGGTATCAACCGAAATGATACAGGCCCTATGATGAGATGCTCATTTGAAGAGACTGTTGATATTCTGCTTG ATGCAGCTGTATATGCTGAGTCTGATCACTTGAGGGGCGTCACTGAAAATATTATGTTAGGTCAACTTGCCCCCATCGGC ACTGGTGAGTGCGCCTTGTATCTTAATGATGAGATGCTGAAAAATGCTATTGAGCTCCAGCTACCTAGCTATATGGATGG TCTTGATTTTGGCATGACACCTGGCCGTTCCCCAATATCTGGAACTCCGTATCATGAAGGCATGATGTCTCCAAGTTATA TGTTAAGCCCAAATCTACGCTTGTCTCCTACCAATGATGCACAGTTTTCACCTTATGTTGGTGGGATGGCATTTTCTCCT ACTTCATCTCCTGGTTACAGTCCTTCATCTCCAGGTTACAGTCCATCATCACCAGGATACAGTCCCACATCTCCAGGGTA CAGCCCCACTTCCCCTGGGTACAGCCCCACATCACCTGGGTACAGCCCCACCTCTCCAACATACAGTCCTAGCTCTCCAG GATATAGTCCTACAAGCCCAGCTTATTCACCAACCAGTCCATCTTACTCCCCCACATCACCGAGTTATAGCCCTACATCA CCCAGCTACAGTCCCACCTCTCCAAGCTACAGCCCCACATCTCCCAGCTATAGCCCCACTTCACCGGCGTACAGTCCCAC TTCACCAGCATATAGCCCCACTTCACCGGCTTATAGTCCTACTTCCCCATCATACAGTCCTACTTCACCATCATACAGTC CTACTTCGCCTTCCTACAGCCCAACATCACCCTCATATAGCCCAACATCTCCATCATATAGTCCTACATCACCTGCTTAT AGTCCCACATCTCCTGGGTACAGCCCTACATCTCCCTCTTACAGCCCAACATCTCCATCATATAGCCCTACTTCCCCAAG TTACAATCCACAGTCTGCTAAGTATAGTCCTTCATTGGCATATTCTCCAAGTAGCCCAAGGTTGTCTCCATCAAGTCCAT ATAGTCCAACATCTCCAAACTATAGGTAAGCATTTCTCAGGGCTTTTTAATATTTATTTTCGATACTGAATGTGATAATA TATGAGCCTGTAAATGCTGTGTTGATATGTCAAAAACTTAAAACCCACTCCCTTTTCATTAGGCTTCTTGGGTTTGAGGA GGAACCAACCAGTACCTTCTGCAATAGGAGTTATTTTCATTTGGATGCTAGATATTGTTCAATGATTAGCTTGTTTGATT GCTGAATTTAGTCTATGATCTATCTTCTAGTCTTTTCTTTCTCAATTGCATTTTTCTTTCATGATAATTCTTGGCTCCAA TTAAATTTGTCTTATTATTTTCCAGCCCGACATCTCCATCGTATTCCCCAACATCTCCATCTTATTCTCCATCAAGCCCA ACTTACAGTCCCAGCAGGTAAGTGAACTCTATCAATTATGCTGCCAACCTTTACACAATTCATCTCTTGTCCATGTAAAG AACAATAGTAAAAATGTGAATTTTTATTCCTTTTATTAATTTTTTTTAAAATTAACACTGTTACTTATTCTTTTATTTAT GTGACATGTGACATTCATATTTTTGCATTTTTCTAGCCCGTATAATTCTGGTGTGAGCCCAGACTATAGCCCAAGTTCTC CGCAATTCAGGTATACATATATGCAGATGATTCATTAACTGCTAAAATGTATGGAAGGGGCATATATCTGAGAGCATGTC TGTTTTTGTTGTTGTTTCTGTTTGGTTATTTGCAGTCCCAGTACGGGTTACTCACCAAGTCAACCTGGTTACTCACCATC GTCAACTAGCCAGTACACTCCGCAGACGAATGACAAAGATGAAAGAGGCAAAGACTGA
CDS sequence (LotjaGi2g1v0377500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATCCGCTTCCCTTTCTCTCCGGCGGAGGTTGCCAAAGTCCGCCTCGTCCAGTTCGGAATCCTCAGCCCGGACGA GATCAGGCAAATGTCTGTGGTGCAAATCGAGCACGGTGAGACGACGGAGAGAGGAAAACCGAAGGTTGGAGGGTTGAGCG ACCCTCGCCTTGGGACTATTGACAGGAAGATGAAGTGTGAGACGTGTACTGCTAGTATGGCTGAGTGTCCTGGTCACTTT GGCCACTTGGAGCTTGCGAAACCTATGTTTCACATCGGGTTCTTGAAGACTGTGTTGACTATCATGCGTTGTGTTTGCTT TAACTGCTCTAAAATTCTAGCAGATGAGCAAGATCATAAGTTTAAGCAAGCTTTGAGGATCAGGAATCCCAAACTTAGGC TGAGAAAAATTTTAGATGCTTGCAAAAACAAATCCAAGTGTGATGGTGGTGATGAAATTGACCTTCCTGGTCAAGATACA GAAGAGCCTCTTAAAAAGAGCCGCGGTGGCTGTGGTGCTCAGCAACCAAAGATTACTATTGAGGGGATGAAAATGATTGC TGAGTATAAAGCTCAAAGGAAGAAAAGTGATGATCAGGAACAGCTTCCTGAACCTGTAGAGAGGAAACAGACTCTGTCTG CAGAAAGGGTTCTCAGTGTTCTGAAAAGGATAAGCGATGAGGACTGCCAGTTGCTAGGCTTGAATCCAAACTATGCCCGT CCTGACTGGATGATTTTACAAGTTCTTCCAATTCCTCCTCCACCTGATGATTTAACTCATCAGCTAGCCATGATCATCAG GCACAATGAGAATCTGAAGAGACAGGAGAGGAATGGATCTCCTGCACATATTATTTCAGAGTTTGCTCAGTTGTTGCAAT TTCACATAGCCACATATTTTGATAATGAGTTGCCTGGATTGCCAAGGGCTACTCAAAGATCTGGAAGGCCAATCAAATCA ATCTGTAGCAGGCTTAAAGCAAAAGAAGGTCGGATTAGAGGTAACTTGATGGGGAAAAGAGTTGATTTTTCTGCTCGAAC GGTAATTACACCAGACCCAACCATTAACATCGATCAACTGGGAGTACCATGGAGTATTGCTTTGAATCTTACATACCCTG AGACTGTGACTCCATACAATATTGAGAGGTTGAAGGAACTGGTTGAGTATGGACCTCATCCTCCGCCTGGAAAAACTGGT GCCAAGTATATCATTCGTGATGATGGGCAAAGGCTTGATCTCCGATATATAAAGAAAAGTAGCGATCACCATTTGGAGCT TGGATACAAGGTGGAGCGACATTTGAACGATGGAGACTTTGTTCTCTTCAATCGTCAGCCTAGTCTTCATAAAATGTCTA TCATGGGTCATAGAATCAAAATTATGCCTTACTCTACATTCCGGCTTAACTTGTCAGTAACTTCTCCATATAATGCTGAT TTTGATGGTGATGAAATGAACATGCATGTTCCTCAGTCATTTGAAACTAGAGCTGAGGTGTTGGAGCTGATGATGGTACC AAAATGCATAGTGTCCCCACAAGCAAATAGGCCCGTAATGGGAATTGTCCAAGATACACTCCTAGGATGCAGAAAAATCA CCAAGAGAGATACCTTCATTTCAAAGGATGTTTTTATGAACATATTGATGTGGTGGGAAGATTTTGACGGGAAAGTTCCT ACTCCCACAATATTGAAGCCAGAACCATTGTGGACTGGGAAACAAGTTTTCAATCTTATAATTCCTAAACCAATAAATCT GATCAGATATTCTAGCTGGCACAATGAGAGTGAAAGAGGACCCATAACCCCTGGGGATACGATGGTTAGAATTGAAAAGG GGGAACTACTTACTGGAACTCTATGCAAAAAGACTCTTGGAACATCCACCGGAAGTCTGATTCATGTCATTTGGGAAGAG GTTGGCCCTGATGCAGCACGTAAATTCCTTGGGCATACTCAGTGGCTTGTAAACTACTGGCTTTTGCAGCATGCTTTTAG CATTGGAATAGGGGATACAATTGCTGACGCTTCAACTATGGAGACTATTAATCAGACTATTTCACAAGCTAAGGAGAAAG TGAAACAACTCATCAGGGAAGCTCAAGAGAAGAAATTAGAGGCTGAACCTGGTCGGACAATGATGGAGTCTTTTGAAAAT AGAGTGAACCAGACTCTGAATAAAGCTCGTGATGATGCGGGAAATAGTGCCCAAAAAAGTTTATCTGAGAGCAATAATCT GAAAGCTATGGTGACAGCTGGTTCTAAAGGAAGTTTTATCAACATATCTCAGATGACTGCTTGTGTGGGCCAGCAGAATG TTGAGGGTAAGCGAATTCCATATGGGTTTGTAGACCGGACATTGCCTCACTTTACAAAAGATGATTATGGGCCTGAAAGT CGTGGCTTTGTGGAGAACTCATATCTTCGTGGGCTGACCCCTCAAGAGTTCTTTTTTCATGCCATGGGTGGTAGGGAAGG TCTTATTGATACTGCAGTGAAGACATCTGAAACTGGGTACATTCAGAGGCGGCTTGTGAAGGCTATGGAGGATATCATGG TTAAGTATGATGGCACAGTTAGGAACTCATTGGGGGATGTTATACAATTTCTCTATGGTGAAGACGGTATGGATGCTGTG TGGATAGAAACGCAGAAGCTGGATTCACTTAAAATGAAAAAAACAGATTTTGATAGGGCTTTTAGGTATGAATTTGATGA TGAATACTGGAAGCCTACTTACATGCTTGAAGAGCCTGTAGAAGACTTGAAAACGATTAGAGAATTTCGTAATGTGTTTG AGGCTGAAGTCCAAAAGCTTGAAGCTGATAGGCATCAACTTGCAACTGAAATTGCACCTACTGGTGATAGTTCTCTGCCC TTACCTGTTAACCTTAAGAGGCTTATCTGGAATGCTCAGAAGACCTTTAAGGTTGACTTCCGAAGGCCTTCTGATATGCA TCCAATGGAAATTGTAGAAGCTATTGATAAGCTCCAAGAGCGACTTAAAGTGGTTCCTGGTGAGGATCTTTTAAGCCAAG AAGCTCAGAAGAATGCTACTCTCCTATTTAACATTCTGGTTCGCAGCACTTTTGCCAGTAAAAGGGTCCTGGAAGAATAC AGGCTTTCTCGTGAGGCATTTGAGTGGGTTGTCGGAGAAATAGAATCAAGGTTCCTGCAATCACTTGTAGCCTCTGGTGA AATGATTGGTTGTGTGGCAGCACAATCAATTGGTGAGCCTGCTACCCAGATGACTCTCAACACTTTCCACTATGCTGGTG TCAGTGCTAAGAATGTCACCTTGGGTGTTCCCAGGTTAAGGGAAATCATTAATGTGGCTAAGAGAATTAAAACACCTTCT CTGTCTGTTTACTTGAAACCTGACGTCAGTAAAACTAAAGAGAGAGCCAAGACTGTCCAGTGTGCTTTAGAATATACCAC TCTCAGGAGTGTGACTCAAGCTACAGAGGTTTGGTATGATCCCGACCCAATGAGCACAGTTATTGATGAGGATGTTGATT TCGTGAAGTCCTACTATGAAATGCCTGATGAAGAAGTTGCGCTTGAAAAAATCTCACCCTGGTTGCTTCGCATAGAATTG AATCGTGAAATGATGGTGGATAAGAAGTTGAGTATGGCAGACATTGCTGAGAAGATTAACCTTGAATTTGATGATGATTT GACATGTATTTTTAATGATGACAATGCTGAGAAACTTATACTTCGTATCCGTATTATGAACGCCGAAGGGCCCAAGGGAG AGATTCAGGATGATACTGCTGAAGATGATGTTTTCTTAAAGAAAATAGAAACCAACATGCTGACTGAAATGACCTTGCGA GGTATCGCAGACATCAACAAAGTGTTTATCAAAAATACTAAAATTCAGAAGTTTGATGAGGTTGAAGGGTTTAAGCCTCA TGAAGAATGGATGCTTGATACTGAAGGTGTCAACCTTCTAGCTGTAATGTGCCATGAAGATGTTGATGCATCGAGGACTA CAAGCAACCACTTGATTGAAGTTATTGAAGTTCTTGGTATTGAGGCAGTTCGGCGGTCTCTGCTGGATGAATTGCGTGTT GTCATTTCTTTTGATGGTTCTTATGTCAATTATAGGCACCTGGCTATCCTTTGTGATACCATGACTTATCGGGGACATTT GATGGCAATTACGCGTCACGGTATCAACCGAAATGATACAGGCCCTATGATGAGATGCTCATTTGAAGAGACTGTTGATA TTCTGCTTGATGCAGCTGTATATGCTGAGTCTGATCACTTGAGGGGCGTCACTGAAAATATTATGTTAGGTCAACTTGCC CCCATCGGCACTGGTGAGTGCGCCTTGTATCTTAATGATGAGATGCTGAAAAATGCTATTGAGCTCCAGCTACCTAGCTA TATGGATGGTCTTGATTTTGGCATGACACCTGGCCGTTCCCCAATATCTGGAACTCCGTATCATGAAGGCATGATGTCTC CAAGTTATATGTTAAGCCCAAATCTACGCTTGTCTCCTACCAATGATGCACAGTTTTCACCTTATGTTGGTGGGATGGCA TTTTCTCCTACTTCATCTCCTGGTTACAGTCCTTCATCTCCAGGTTACAGTCCATCATCACCAGGATACAGTCCCACATC TCCAGGGTACAGCCCCACTTCCCCTGGGTACAGCCCCACATCACCTGGGTACAGCCCCACCTCTCCAACATACAGTCCTA GCTCTCCAGGATATAGTCCTACAAGCCCAGCTTATTCACCAACCAGTCCATCTTACTCCCCCACATCACCGAGTTATAGC CCTACATCACCCAGCTACAGTCCCACCTCTCCAAGCTACAGCCCCACATCTCCCAGCTATAGCCCCACTTCACCGGCGTA CAGTCCCACTTCACCAGCATATAGCCCCACTTCACCGGCTTATAGTCCTACTTCCCCATCATACAGTCCTACTTCACCAT CATACAGTCCTACTTCGCCTTCCTACAGCCCAACATCACCCTCATATAGCCCAACATCTCCATCATATAGTCCTACATCA CCTGCTTATAGTCCCACATCTCCTGGGTACAGCCCTACATCTCCCTCTTACAGCCCAACATCTCCATCATATAGCCCTAC TTCCCCAAGTTACAATCCACAGTCTGCTAAGTATAGTCCTTCATTGGCATATTCTCCAAGTAGCCCAAGGTTGTCTCCAT CAAGTCCATATAGTCCAACATCTCCAAACTATAGCCCGACATCTCCATCGTATTCCCCAACATCTCCATCTTATTCTCCA TCAAGCCCAACTTACAGTCCCAGCAGCCCGTATAATTCTGGTGTGAGCCCAGACTATAGCCCAAGTTCTCCGCAATTCAG TCCCAGTACGGGTTACTCACCAAGTCAACCTGGTTACTCACCATCGTCAACTAGCCAGTACACTCCGCAGACGAATGACA AAGATGAAAGAGGCAAAGACTGA
Protein sequence (LotjaGi2g1v0377500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIRFPFSPAEVAKVRLVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKMKCETCTASMAECPGHF GHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADEQDHKFKQALRIRNPKLRLRKILDACKNKSKCDGGDEIDLPGQDT EEPLKKSRGGCGAQQPKITIEGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLSVLKRISDEDCQLLGLNPNYAR PDWMILQVLPIPPPPDDLTHQLAMIIRHNENLKRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKS ICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTG AKYIIRDDGQRLDLRYIKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFISKDVFMNILMWWEDFDGKVP TPTILKPEPLWTGKQVFNLIIPKPINLIRYSSWHNESERGPITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEE VGPDAARKFLGHTQWLVNYWLLQHAFSIGIGDTIADASTMETINQTISQAKEKVKQLIREAQEKKLEAEPGRTMMESFEN RVNQTLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPES RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAV WIETQKLDSLKMKKTDFDRAFRYEFDDEYWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRHQLATEIAPTGDSSLP LPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVPGEDLLSQEAQKNATLLFNILVRSTFASKRVLEEY RLSREAFEWVVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPS LSVYLKPDVSKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTVIDEDVDFVKSYYEMPDEEVALEKISPWLLRIEL NREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNAEGPKGEIQDDTAEDDVFLKKIETNMLTEMTLR GIADINKVFIKNTKIQKFDEVEGFKPHEEWMLDTEGVNLLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRV VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDHLRGVTENIMLGQLA PIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMA FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYS PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS PAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSP SSPTYSPSSPYNSGVSPDYSPSSPQFSPSTGYSPSQPGYSPSSTSQYTPQTNDKDERGKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 1553 | 1552 | 0.0 | – | |
| PANTHER | 2 | 1553 | 1552 | 0.0 | – | |
| Gene3D | 3 | 122 | 120 | 3.1E-33 | – | |
| SUPERFAMILY | 6 | 1455 | 1450 | 0.0 | – | |
| Pfam | 14 | 336 | 323 | 2.9E-96 | ||
| CDD | 18 | 857 | 840 | 0.0 | – | |
| MobiDBLite | 152 | 173 | 22 | - | – | |
| MobiDBLite | 152 | 166 | 15 | - | – | |
| SMART | 242 | 534 | 293 | 6.2E-182 | ||
| Gene3D | 251 | 301 | 51 | 1.4E-10 | – | |
| Gene3D | 328 | 500 | 173 | 1.3E-72 | – | |
| Pfam | 338 | 506 | 169 | 3.8E-71 | ||
| Gene3D | 371 | 437 | 67 | 1.3E-72 | – | |
| Gene3D | 510 | 667 | 158 | 2.3E-55 | ||
| Pfam | 510 | 673 | 164 | 2.2E-47 | ||
| Gene3D | 668 | 813 | 146 | 1.5E-56 | ||
| Coils | 680 | 707 | 28 | - | – | |
| Pfam | 700 | 804 | 105 | 3.9E-39 | ||
| Pfam | 811 | 1401 | 591 | 3.1E-105 | ||
| Gene3D | 850 | 888 | 39 | 2.3E-13 | – | |
| Pfam | 877 | 1061 | 185 | 2.8E-65 | ||
| Coils | 930 | 950 | 21 | - | – | |
| CDD | 1040 | 1452 | 413 | 0.0 | – | |
| Gene3D | 1146 | 1281 | 136 | 2.2E-56 | ||
| Pfam | 1146 | 1280 | 135 | 3.6E-53 | ||
| Gene3D | 1403 | 1446 | 44 | 7.1E-18 | – | |
| Pfam | 1522 | 1536 | 15 | 0.84 | ||
| MobiDBLite | 1524 | 1820 | 297 | - | – | |
| MobiDBLite | 1524 | 1731 | 208 | - | – | |
| PRINTS | 1526 | 1542 | 17 | 4.4E-9 | – | |
| Pfam | 1537 | 1550 | 14 | 0.31 | ||
| Pfam | 1551 | 1564 | 14 | 0.0021 | ||
| PRINTS | 1555 | 1576 | 22 | 4.4E-9 | – | |
| Pfam | 1565 | 1578 | 14 | 1.0 | ||
| Pfam | 1579 | 1592 | 14 | 0.11 | ||
| PRINTS | 1583 | 1599 | 17 | 4.4E-9 | – | |
| ProSitePatterns | 1592 | 1598 | 7 | - | ||
| Pfam | 1593 | 1606 | 14 | 1.7 | ||
| ProSitePatterns | 1599 | 1605 | 7 | - | ||
| PRINTS | 1600 | 1617 | 18 | 4.4E-9 | – | |
| ProSitePatterns | 1606 | 1612 | 7 | - | ||
| Pfam | 1607 | 1620 | 14 | 1.7 | ||
| ProSitePatterns | 1613 | 1619 | 7 | - | ||
| PRINTS | 1618 | 1643 | 26 | 4.4E-9 | – | |
| Pfam | 1621 | 1634 | 14 | 0.02 | ||
| Pfam | 1635 | 1648 | 14 | 0.11 | ||
| ProSitePatterns | 1648 | 1654 | 7 | - | ||
| Pfam | 1649 | 1662 | 14 | 1.7 | ||
| ProSitePatterns | 1655 | 1661 | 7 | - | ||
| ProSitePatterns | 1662 | 1668 | 7 | - | ||
| Pfam | 1663 | 1676 | 14 | 1.7 | ||
| ProSitePatterns | 1669 | 1675 | 7 | - | ||
| Pfam | 1677 | 1690 | 14 | 0.0095 | ||
| ProSitePatterns | 1690 | 1696 | 7 | - | ||
| Pfam | 1691 | 1704 | 14 | 1.7 | ||
| ProSitePatterns | 1697 | 1703 | 7 | - | ||
| ProSitePatterns | 1704 | 1710 | 7 | - | ||
| Pfam | 1705 | 1718 | 14 | 1.5 | ||
| ProSitePatterns | 1737 | 1743 | 7 | - | ||
| Pfam | 1738 | 1751 | 14 | 0.16 | ||
| MobiDBLite | 1744 | 1811 | 68 | - | – | |
| ProSitePatterns | 1744 | 1750 | 7 | - | ||
| ProSitePatterns | 1751 | 1757 | 7 | - | ||
| Pfam | 1752 | 1765 | 14 | 2.8 | ||
| ProSitePatterns | 1758 | 1764 | 7 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed 5'-3' RNA polymerase activity | Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. | ||
| Cellular component | RNA polymerase II, core complex | RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Transcription by RNA polymerase II | The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). |
Expression pattern of LotjaGi2g1v0377500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…