Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi1g1v0086700
Transcript ID	LotjaGi1g1v0086700.1
Lotus japonicus genome version	Gifu v1.2
Description	Histone acetyltransferase; TAIR: AT5G56740.1 histone acetyltransferase of the GNAT family 2; Swiss-Prot: sp\|Q9FJT8\|HATB_ARATH Histone acetyltransferase type B catalytic subunit; TrEMBL-Plants: tr\|I1M828\|I1M828_SOYBN Histone acetyltransferase; Found in the gene: LotjaGi1g1v0086700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:12529865..12534055) extracted from Lotus japonicus Gifu genome v1.2.

CTTAGTACGAGTATCCGCACCAAAGAAATTCATTATTGTTATTTACAATAAATATCATGAGCTCACATTTGGGCCCGTTA CATTGATCAAGGCAGCCCAATGATTGATTGCTTTAAAAGCCCTAATCTAAGTTTCCCCTCCCAATTCATTTCCCGCTCTA CAAACCCTAACTTCCCAACACTCTCTCAGTTGAGCTGAAGAAGAAGACGAAGAAAGCGCGCTCATGGGGCAGAAGCAGCG ATCGAACTCCGATCCCAACAACGACGCCAAAAAGCGACGCCGTGTTGGATTTTCCGCCGTCGGTCAGTTTTATTCATTTT CTACTCATTTTCAATTTTTTTTTTTTAATTTGGGTTGATGGTTTCCATGCGTATGTGAACATTTCTTCATTTCCTTTGTA GATGCTGGAGTTGAAGCCAAAGACTGCATCACAATCTACCTAGGTACGATAAAAATGTGCTATATTCATTCTATGCTGCT GGGTAGCTCTTGATTTGAATATAAGAGTGTGAATCAATTATGGGATGGGGAAACGTGGTTCCTTTGAAAATGGGTCGCTG ATTTTATTATTCTGCTAATTATAGCTTAATTAACTCTCTTATTCTTCTTCATACTCTGTTATTGTTCCTGTACTTGTTAT TGTTATTGTCGATTTTCCTGCTTATTTGCTGGTTATGAGATGAGAGCAGTATTTTTAGCATTATAGGTAACTGAAAATCG ATGTTAAGGAGGTTTTAATCCGAGCTGTACCGGTGTATATAACTAGGTATTTTTTGTTTTGTTTTAAAAACTGCCTGTTT AGGCGGAAGTTTTCGATATGAAGAGCTTATGCTCAAGTGAGCTCAACCTATGAAAATGGAAATTATTTCTTTCTAGACCC TTTTTTTTTTCATTTTTTATGTAGCACATAGAGTGGACCTTGACACCTTGTTAATGAGCAACGTTCTTTTAGATGCAGCC TGTTGCCTTCTCTTCTGTCAATATGCTTCTGCTGCCTCTTTTTCTTTGAATAACCTTTCACAAGCTTAGGTTGCTAGGGA CATGATATTTCTAGTCTGTTTCTCACTTTCTCGTAGTCAAGTTCATTAAAGTGGCCTTTACCATTATTTCCTTGAGATGT TTCTTGTCTGTATGGTGTGATTTGGCAACTGGCATGAGTTTTTTATATAGTGTCTGCTATTATTGTGCAGTTTCGAGCGA AGATGAATTTAATGCTCCAGAGAGCTTGGTCATCAATCCTGTGGATTTGAATAGCTTCTTTGATGATGATGGGAAAATTT ATGGTTATGAGGGCTTGAAGGTCAGATTCTTTTGGACAAATAATTGGGGATTTTCTTTTTAAAAAATATTCATATTTGAA TGTTTCATGGTGTACAATTACTTGTTTCTCAGATTATTTTGCTGTTTTTTTTTTGTTTTTGCAGATTACCATCTGGATTA GCAGCATATCCTTTTATGCTTATGCTGATATTACGTTTGAGAGTTCTTCTGATGTAAGTTCTGAATATCTTTGGATTTTA GACTAGTGGAAAAAATATTCATATTCCTATATTGCCTTACTGGTTTATCCAGAATTTGCGTTTGATTTTACATCATTGCT CTGACACTTTCTTTCAATGTGTTGTTTGGTTTCTTAAGCGAGGCAAAGGGATAACAGATCTAAAATCTTCTCTTCAGGTA TGCATCAGCATCTACTGCATTACCACTATTTTGATGCCTATCTATTACCCATAACACTGCAACTTTGTTTATTATTTTGT ACAGACAATTTTTGCTGAGACTCTTGTTGATAGCAAGGATGAATTCCTTCAAAAATATTTGCTGGATAAGGATTTTGTCA GGTATTAAGCCTCCACTTCTTTTGTCATTCTAAAGAAAAACAACATGTGTGTTTTCAGTATATTACTTGAATTTGATTTA TAAAATGTTAAAGAATGTGGCTGCGAATTATAAATGGTTTGCAGAACAACTATCTCAAGTGGAGAGGTTTTGAAGCACAA ATCTTTCAAGGGGAACTTTTCTGACTCTAATCAGAATGAAGATTCAGCTACTTCTGATGTTGAGGTTGTAATTTGCATTT CGGCTCAATGCTGCTCTATATTTTTAGTTAGGTTGCTTGAGTGTTAAAGCCCAGTTTAATTTTTTATTCTATATGAACAC TATATTCTTATACATGTTGCCACTCAAATTTTTGGCAATCTGCAATACTTTTGTATGGTTCTTTATCTTAGGTTCATAGT AGAAATTATGAATTGTCCCATACACGTATATATGGTGTTGTACATTCTAGCTAGGCAGTGACCAGATCTACTTTTAGCAA ATATGATTCACATGTTTGAACAACCTTTCTTTACATGAAAAGTCCAGCCAAGTCCCCCCCCCCCTCCCCCTTGTGGTTAA AATTGTGTGCAACAAGTTTGTGTTTCGTCTTTACTCTCCTTTAAACTTCAGTTAGGTTTCTTGTGTCTGCATATGCATAT TTTGAGGGATATTGTGAAAGTGAATTCTGATTTATCTCCTGTATCAGGTCGTTCGTATGGTGGCAGGCAACATTTCTACT GGGCAGCTTTACAGTCATCTAATACCCCTTACTCTTCTTCTTGTTGATGGTAATTTTCACCCATTTTACTGCTTCATACC TCTGTTGGGCACCGTGTTTAGATTACACAGAGCTGTAGCCTTTTTTCATAACCTTGTTTGTCATGTAGGGAGCAGTCCTA TTGATGTTACGGATCCACAATGGGAGTTGTATGTAGTGATTCAGAAGAAAACTGATCTGCAGGGAGACAGCCAACGTGTG TTGATTGGTTTTACTGCTATTTATCGATTTTACCACTATCCTGATAGTTCCCGATTGCGACTGGGTCAGGTTTGTTTTGT AGTGGACATTCAGTAATGCAGCTTTTTACTCTCTAATGTTTTTTAACTTGTATCATTCTCTTGTTAAATTCTAAATTGCT TTTTTATCCCATCTTTTGATGGGTCCTTCTGTTGTTGGCAGATACTCGTATTGCCTCCTTACCAGCACAAGGGTTATGGT CGGTTCCTTCTAGAGGTTCTAAATGAAGTTGCCATGTCTGAAAATGTTTTTGACCTGACTATTGAAGAGCCGTTGGATAA CCTCCAGCATGTCCGAACCTGTATTGACACTCTACGCCTGCTTCATTTCGAGCCAATCCAGCATTTAGTTACTAAGGCTG TTTCACTTCTAAAGGAAGGAAAATTGTCAAAGAAAACCCATTCTCCTCGACTCATACCACCTCCAAGCGCTATTGAGGAT GTTAGAAAAAGTCTGAAAATTAACAAAAAGCAGTTTCTCCAGTGTTGGGAGGTTTTGCTCTACATTGGCCTTGATCCTAT TGACAAGTACAGGGAGAACTTTGTTAGTATTATTTCCGAACGTGTGAAGTATGATATCTTAGGGAAAGATTCTGGGACTT CTGGGAAGAAGCTTATTGAAGTACCAAGCGATACTGATGAGGATATGTCATTTGTCATGTTCAGATCAGAGGCCCATGAA GCTAGTACTGTGCAGATTGATGACAATCAGACAAATCAACAAGAGCAACTGCAAAAGTTAGTTGAAGATAGGGTGAAAGA AATACAGTTGGTCGCAGAAAAGGTAGCCTTGCATCGTGGGAGCTCAGGCGTGGCTGTTAATTAAATTTCTCCTTCACAAG ATGACATGCGATGAGGTTTGTGTGATTGATTTTCCGCTGACGAACAGGAGTTTTTATCAGAGGTTATCTTAGCACATTTC TGAGTTCGGCAAAGACAAAGAAGACTCCTAGGAGGCACAATCTAGGTTGTTTTGTGGTTCTTAATTCTAGGTTAGTACAA TTTAATTATCCGAGGCTGTGAAGGAACCATGTTATGTAGTTGTAAGCTGTGATTAATATGACTAACCGCAGCAAGTTGAT TGTTGATATCATTGCGATCAAATATTGCTCGTGCTTTTATGCCATGTGTTTGCTTGCTGCATCCGATCCAAGGATTGTGG GTTGTTGTTTTGTAGGTTTCTCCCTTTGTTTTGTTCTTACTTGAAATTTGTTATTTTTATTAGGGGCGTGGGGGAAAAGG CAGTGGGAGAGGTAGAGTTTATATTTGAGGGGGGCAAGTACCAACTAAAAGAAAATTATGAATAACACATGAAAAAGATG AAATTTTAAAATCTAACTAACATTCTTTATT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0086700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGCAGAAGCAGCGATCGAACTCCGATCCCAACAACGACGCCAAAAAGCGACGCCGTGTTGGATTTTCCGCCGTCGA TGCTGGAGTTGAAGCCAAAGACTGCATCACAATCTACCTAGTTTCGAGCGAAGATGAATTTAATGCTCCAGAGAGCTTGG TCATCAATCCTGTGGATTTGAATAGCTTCTTTGATGATGATGGGAAAATTTATGGTTATGAGGGCTTGAAGATTACCATC TGGATTAGCAGCATATCCTTTTATGCTTATGCTGATATTACGTTTGAGAGTTCTTCTGATCGAGGCAAAGGGATAACAGA TCTAAAATCTTCTCTTCAGACAATTTTTGCTGAGACTCTTGTTGATAGCAAGGATGAATTCCTTCAAAAATATTTGCTGG ATAAGGATTTTGTCAGAACAACTATCTCAAGTGGAGAGGTTTTGAAGCACAAATCTTTCAAGGGGAACTTTTCTGACTCT AATCAGAATGAAGATTCAGCTACTTCTGATGTTGAGGTCGTTCGTATGGTGGCAGGCAACATTTCTACTGGGCAGCTTTA CAGTCATCTAATACCCCTTACTCTTCTTCTTGTTGATGGGAGCAGTCCTATTGATGTTACGGATCCACAATGGGAGTTGT ATGTAGTGATTCAGAAGAAAACTGATCTGCAGGGAGACAGCCAACGTGTGTTGATTGGTTTTACTGCTATTTATCGATTT TACCACTATCCTGATAGTTCCCGATTGCGACTGGGTCAGATACTCGTATTGCCTCCTTACCAGCACAAGGGTTATGGTCG GTTCCTTCTAGAGGTTCTAAATGAAGTTGCCATGTCTGAAAATGTTTTTGACCTGACTATTGAAGAGCCGTTGGATAACC TCCAGCATGTCCGAACCTGTATTGACACTCTACGCCTGCTTCATTTCGAGCCAATCCAGCATTTAGTTACTAAGGCTGTT TCACTTCTAAAGGAAGGAAAATTGTCAAAGAAAACCCATTCTCCTCGACTCATACCACCTCCAAGCGCTATTGAGGATGT TAGAAAAAGTCTGAAAATTAACAAAAAGCAGTTTCTCCAGTGTTGGGAGGTTTTGCTCTACATTGGCCTTGATCCTATTG ACAAGTACAGGGAGAACTTTGTTAGTATTATTTCCGAACGTGTGAAGTATGATATCTTAGGGAAAGATTCTGGGACTTCT GGGAAGAAGCTTATTGAAGTACCAAGCGATACTGATGAGGATATGTCATTTGTCATGTTCAGATCAGAGGCCCATGAAGC TAGTACTGTGCAGATTGATGACAATCAGACAAATCAACAAGAGCAACTGCAAAAGTTAGTTGAAGATAGGGTGAAAGAAA TACAGTTGGTCGCAGAAAAGGTAGCCTTGCATCGTGGGAGCTCAGGCGTGGCTGTTAATTAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0086700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGQKQRSNSDPNNDAKKRRRVGFSAVDAGVEAKDCITIYLVSSEDEFNAPESLVINPVDLNSFFDDDGKIYGYEGLKITI WISSISFYAYADITFESSSDRGKGITDLKSSLQTIFAETLVDSKDEFLQKYLLDKDFVRTTISSGEVLKHKSFKGNFSDS NQNEDSATSDVEVVRMVAGNISTGQLYSHLIPLTLLLVDGSSPIDVTDPQWELYVVIQKKTDLQGDSQRVLIGFTAIYRF YHYPDSSRLRLGQILVLPPYQHKGYGRFLLEVLNEVAMSENVFDLTIEEPLDNLQHVRTCIDTLRLLHFEPIQHLVTKAV SLLKEGKLSKKTHSPRLIPPPSAIEDVRKSLKINKKQFLQCWEVLLYIGLDPIDKYRENFVSIISERVKYDILGKDSGTS GKKLIEVPSDTDEDMSFVMFRSEAHEASTVQIDDNQTNQQEQLQKLVEDRVKEIQLVAEKVALHRGSSGVAVN

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12046 View details on PTHR12046 Search for proteins/transripts with this domain View external data on PTHR12046	16	462	447	7.4E-105	IPR017380 Show description in modal box View details on IPR017380 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF55729 View details on SSF55729 Search for proteins/transripts with this domain View external data on SSF55729	27	368	342	3.0E-58	IPR016181 Show description in modal box View details on IPR016181 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF10394 View details on PF10394 Search for proteins/transripts with this domain View external data on PF10394	30	199	170	2.4E-21	IPR019467 Show description in modal box View details on IPR019467 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.90.360.10 View details on G3DSA:3.90.360.10 Search for proteins/transripts with this domain View external data on G3DSA:3.90.360.10	34	199	166	3.0E-57	IPR037113 Show description in modal box View details on IPR037113 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.630.30 View details on G3DSA:3.40.630.30 Search for proteins/transripts with this domain View external data on G3DSA:3.40.630.30	142	298	157	3.0E-57	–
Pfam	PF00583 View details on PF00583 Search for proteins/transripts with this domain View external data on PF00583	229	291	63	4.7E-6	IPR000182 Show description in modal box View details on IPR000182 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd04301 View details on cd04301 Search for proteins/transripts with this domain View external data on cd04301	231	288	58	9.37402E-5	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004402 View details of GO:0004402 AmiGO InterPro QuickGO	Molecular function	Histone acetyltransferase activity	Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone.	Subterm of View details of GO:0061733
GO:0005634 View details of GO:0005634 AmiGO InterPro QuickGO	Cellular component	Nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.	Subterm of View details of GO:0043231
GO:0006325 View details of GO:0006325 AmiGO InterPro QuickGO	Biological process	Chromatin organization	Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.	Subterm of View details of GO:0016043 Part of View details of GO:0051276
GO:0006348 View details of GO:0006348 AmiGO InterPro QuickGO	Biological process	Chromatin silencing at telomere	Repression of transcription of telomeric DNA by altering the structure of chromatin.	Subterm of View details of GO:0006342
GO:0008080 View details of GO:0008080 AmiGO InterPro QuickGO	Molecular function	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.	Subterm of View details of GO:0016407 View details of GO:0016410
GO:0016573 View details of GO:0016573 AmiGO InterPro QuickGO	Biological process	Histone acetylation	The modification of a histone by the addition of an acetyl group.	Subterm of View details of GO:0016570 View details of GO:0018393

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0086700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi1g1v0086700.1