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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0358500 |
Transcript ID | LotjaGi1g1v0358500.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Mortality factor 4-like protein 1; TAIR: AT1G02740.1 MRG family protein; Swiss-Prot: sp|Q4V3E2|MRG2_ARATH Protein MRG2; TrEMBL-Plants: tr|A0A0B2PA75|A0A0B2PA75_GLYSO Chromatin modification-related protein EAF3; Found in the gene: LotjaGi1g1v0358500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83326550..83330892) extracted from Lotus japonicus Gifu genome v1.2.
AAATGAACTCAATAGGAAGGAGTTAAGGAAGAGACGCGTTTGTTGGACTGTGGTAAGAAATTGATTCTCAGTGAACATCA ACAACATTCATGTAATCGAAGAGTGAGTGTCGGGGATCAGATTGTGAGAGTAAGAAAGAATCGAAATTTGGTGATCGGAG AGTGGAAAATGGGTACCTCCAATGCAATTTCAGAGAACTCCAATGGCAACATCATCATCAGCAGCAACATCAACAGCAGC AGCAGCACTGAGACTGCAACGGAAAATCAGACCCCCCCAGCTGCTCCCTATGCCCAAGGAGAGAAGGTCTTAGCTAACCA CACTAGTTGTCTTTATGAAGCCAAGGTAAGGTTTCTCTCTCTATTCCCTCAATCACTGTGAAATTTAATGTGAAATTTAT GAAATTGGATTTTTCTGTCTTGTTTTAAAGGTTATGGAGATTGAGTACAGGAACAATCAATGGTGGTTCTTTGTTCATTA TCTTGTAAGCATGTCTCCATTTTACTCCTCTTATTAATACCACGTTTACATTTGCCTCCTTTATTGCATTAGCTAGTCTC ATTTTCTCAAATGTTGTTTAAACTATTTTTTTTCTTTTAATTTTATTCTTTTCAGGGTTGGAAGAAAAGGTTAGCATTTA CGTATGTGTTTGGATTTCCGTTGAGTTCAATGTGATCCGCGTTGAAGTTTACGTGGCAAAATCGTGTCTCTCTGATCCAA GTTAAATTCAACGTGGCAAATTCTAGCTTATTTGTTGATAAACTTGAAATCACGTTTTGTGTTTGCGCGAATGCCAAACC AAACATGCGCTAACTCGTCTTATATAAGGGTTTTCATGCAGTTGGGATGAATGGGTTGGTGTGGATCGTCTGCTGAAGCA CACGGCGGAAAACATGAGCACGAAACAAGCCCTTGATGAGAAACATGGCAATGACAAGAATGCGAAAGTCCCCCGTGCAT CCCAGGCGAAATCCAAGGGTTTTAACGGTCAGATGTTTCTTCTCTGCACTTTAATCAATTGTTTGTTGTTGATCACTGGA GAATTTCTCAGCAATTTTCAATTCCCTTGATTGAATACCATGGTTGAGACATGAGATAAACTTCACATTCACTGATCTGT TTGTTAGACAGTAGAGGTAGTTTTAAATTGTGGTTGTGGCCGCGATTGCAGTTATGTTGTTGAATTGCAGACAAATGCAG GTAGATGCGGCCGCAGTTGTAGGTGCGATGCCATTGCGAAGAGTCAAAAATCCTTTTTGTTGTGGCTGCAATTACGGCTG CGGCCGCAGTTATGCTTGCGGAGCCACAGGTACCCTTAGTAGGTGACTGTGGTTGCGGTCGCAGTTATGTCGTGGAATCA CGATCAAATGTGGGTTGATGCTGTTGCAGTAATAGGTGTGATGCCAATGCAGAGACTCAAATCCTTTATGTTGCGGCCGC AATTATGGTTGTGGGCCGCAGTTTAAAACCCTTAGTTGGTGACTGTGCAAGAGTCAAATTAGTAGTTGCTGCATAACATG AGAATTTGAGAATTCATTTTTTAGTATATCGTGTTCTTAACTATTGTATACAGGTTGATGTTGTCTGCCTTGCCATTAGG TGTCCAACAAATTTAAAATTGTTGTTTTATATTTTTGTAGGAATGATTTTCAAAGAGCTGATGTCTAAAATAAAATGGGG CTAATCATAAACAATGTTTATGCTTAGTTGAAGCCCCGCACACAAACAACATAGACCTGACATGTACTATGTCTCACATC TTTGCTACCTTCTTCCCTTCAATGAAAAGTTTGCTGCCGTTTAATTCGTGGGATATGTGATCTAATGTGATATTCAAAAT GCACTCCTTGTTTTAATTTAGTTATTCTTGTAGCGTATGTTTTATAATAGAAGGTCTTTCTAGCTTTTTACCACATACAA AATTACAAATATGTTTGAATCAGTTTTACTTCACCTGTGCCCTTACTATTTTTCTGAGACCTTCTTGGGAAAATGTAATG CAGTGGGAAGAGGCAGGAAAAGAAAGAATGAATCACTGGCTAAGGTACTCTCTCATTATAATCTACTGCCCATTGATTTT GTAAGTTCATGTAAATCATCAGAATCAGTGTAAACTATTCATCAATTTAGTTCAACTATACTATTCTGATATAAGTATTT CAAACTTTTCGCTTCTATTATGTCCAACCCATGTGTGGGGGCCGGGGGGAGGGATAACTCTTCAAAACTATTTTGGGCTA TATGATAATTGATTTTTTTGTTTGCTTAATCGTAGGTAAAATCAGAGGTTGATCCTGATAAAGTTTTCAACATTCAGATC CCACCAACACTAAAGAAGCAATTAGTTGATGATTGTGAGTTTATTACCAATCTGGGCAAGGTAGGGACTAGCGATATCCC TTGTAATATGTTAATTAATATTATTTAATATCAAATCAGTGCCTCATTTCTTTACATGCTAGTTTATATGTTACATAACT GTTTTACTTGAAAGATAATTGCTTTCCATTTGAAATTTGTTAAATTTTTTTTCTTTCTCTGCAGCTTGTTAAGCTTCCTC GTACTCCTAGTGTGAGCGACATAGTTAAGAACTATTTTGATTACAAATTGAAGAAATGTGGCTCGTAAGTTCATGCTGAG ACACCCTTCAGTTTTTAAACTTCATGTTGAAACATTTTTCTGTTTTGGGGAAAGAAATTGTATTTTGAATATCATTTTAG AATAAGAGGGGTAAGAAAATTCCGATATGCTGGCAGGTTAAGCAGTCCAGTTGGCAACTATTGAGAATAAACTATTTCTT TTATCAATGTTGTTGTTATTAAGAATAAACTCTACCTCATAATCTTTAAAAATATTGTGCTCTTTTTTCAAAAGTATTTT ATTTCTGTCAAAAATATTTTTGTCTTCCTGGGTGGTGCCATATCCAAATAGGCGTGTCTTCATGTACTTGGTTTTTTTTT TTGCTTATTTAGTACCTTGAATTCAGTACTCCTTCATCTCTTTGTTTCCCGTACAGCCTTTATGTTTCCAGTTATGGTGC TTATTGTTACTGTTTAATACTATGTTTGTGTAGGATCCCTGATTCAACTGAAGAAATTATGAAAGGACTGTGTTTTTACT TTGACAATGCACTGCCAAATATGCTCTTGTACAAGAATGAGCGTGAGCAGTACAAAGAAGCATGTCCAAATGATATCTTA CCTTCTACTATATATGGTGCTGAACATTTGCTGCGTCTCTTTGGTATGCTGATTTCTGTGCCAAACAAGCTTACTTTATA ATTTAGAATAATGTATTTTGTTGTTTCGTGACAGAAAGGGCAGAGAAGCGTCTTAATAGATTTTTTTGTTAATTAGTTTG TCATGACTCTTGACTTACTTGTTACGCCAAATAGTAATGGAAATATGAAACTCAGCAGGGCTGTTCAAAATGCTGGCCTG ATGGATTTATTGCTATGTGCTCTTTGTTTTTCTAGTTTGCATTTCCTAAAGCTTTACTATTAGAACTTGTAATACTTTGT GATTCTAATTACTGGTGCATCTTTTTCTGAATTTGCAGTTAAGTTGCCGGAGTTATTGCTCAAACTTAGCATTGAAAGTC AAACATTGAAAGAACTTCAGGCACAACTACTTGACTTTCTCAGGTATCAATGATTTCCTTGTAGTTTTATGCTATACGTA GTCATTGGTGATGAATTAAAATAGGGAAAATAGTTTTACTGGCTGTTACAAAATAAACTAAGTTCTGTAAATATCCATTT TGCGGTGCAGGTTCTTGCAAAGAAATCAGAGCAAATTTTTCCTTTCTACTTATCATGTCCAAGAAGATACTGAGAACAGC ACCAACAAACAAGGTGACGAGTAGCGTGTTTGATCCTGGGAAACCCCATAATCACTTATGGGGAGAAGTTACAAAGTGTA GCTTCTGGACTTACCGTGCTTTGGATTGTGTGTCACCACCAATCCAAACACACTATAGGCTTGTCGACTTGGGGACAAAT ATTGATTTTGGCATTTTGGATTGTGCATAATACCGGGGGTTTTGCCGCTTTATAATACTTGTCCTTGTCGCAGTTTACAT TATAGATTAAAATGTTGCGATTAGATTTTTTAAAGTGTTACCCATAGTTATTTTTGTTGACATTGGATCAAGTGAAACAG TTTAATTTAGTCCATTCTCTGGATTGCAGTGGGAGTTGAAATTTTGTGCATAATTTCTGGTTTGTTTTTTGTTGTTGTCA GAACCAGACAACAGTATTCTGGTGCAGATGCAAGAGTCCATGTTGTATGTTTTAGAAAACTCAGCTATTCTGAGTTGAAG CATGCCTCCAAAGCTTATCTGTA
CDS sequence (LotjaGi1g1v0358500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTACCTCCAATGCAATTTCAGAGAACTCCAATGGCAACATCATCATCAGCAGCAACATCAACAGCAGCAGCAGCAC TGAGACTGCAACGGAAAATCAGACCCCCCCAGCTGCTCCCTATGCCCAAGGAGAGAAGGTCTTAGCTAACCACACTAGTT GTCTTTATGAAGCCAAGGTTATGGAGATTGAGTACAGGAACAATCAATGGTGGTTCTTTGTTCATTATCTTGGTTGGAAG AAAAGTTGGGATGAATGGGTTGGTGTGGATCGTCTGCTGAAGCACACGGCGGAAAACATGAGCACGAAACAAGCCCTTGA TGAGAAACATGGCAATGACAAGAATGCGAAAGTCCCCCGTGCATCCCAGGCGAAATCCAAGGGTTTTAACGTGGGAAGAG GCAGGAAAAGAAAGAATGAATCACTGGCTAAGGTAAAATCAGAGGTTGATCCTGATAAAGTTTTCAACATTCAGATCCCA CCAACACTAAAGAAGCAATTAGTTGATGATTGTGAGTTTATTACCAATCTGGGCAAGCTTGTTAAGCTTCCTCGTACTCC TAGTGTGAGCGACATAGTTAAGAACTATTTTGATTACAAATTGAAGAAATGTGGCTCGATCCCTGATTCAACTGAAGAAA TTATGAAAGGACTGTGTTTTTACTTTGACAATGCACTGCCAAATATGCTCTTGTACAAGAATGAGCGTGAGCAGTACAAA GAAGCATGTCCAAATGATATCTTACCTTCTACTATATATGGTGCTGAACATTTGCTGCGTCTCTTTGTTAAGTTGCCGGA GTTATTGCTCAAACTTAGCATTGAAAGTCAAACATTGAAAGAACTTCAGGCACAACTACTTGACTTTCTCAGGTTCTTGC AAAGAAATCAGAGCAAATTTTTCCTTTCTACTTATCATGTCCAAGAAGATACTGAGAACAGCACCAACAAACAAGGTGAC GAGTAG
Protein sequence (LotjaGi1g1v0358500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTSNAISENSNGNIIISSNINSSSSTETATENQTPPAAPYAQGEKVLANHTSCLYEAKVMEIEYRNNQWWFFVHYLGWK KSWDEWVGVDRLLKHTAENMSTKQALDEKHGNDKNAKVPRASQAKSKGFNVGRGRKRKNESLAKVKSEVDPDKVFNIQIP PTLKKQLVDDCEFITNLGKLVKLPRTPSVSDIVKNYFDYKLKKCGSIPDSTEEIMKGLCFYFDNALPNMLLYKNEREQYK EACPNDILPSTIYGAEHLLRLFVKLPELLLKLSIESQTLKELQAQLLDFLRFLQRNQSKFFLSTYHVQEDTENSTNKQGD E
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 6 | 319 | 314 | 2.2E-151 | ||
PANTHER | 6 | 319 | 314 | 2.2E-151 | – | |
MobiDBLite | 18 | 38 | 21 | - | – | |
MobiDBLite | 18 | 43 | 26 | - | – | |
Gene3D | 23 | 122 | 100 | 6.9E-27 | – | |
SUPERFAMILY | 33 | 175 | 143 | 4.3E-23 | ||
PIRSF | 34 | 318 | 285 | 6.8E-85 | ||
Pfam | 44 | 92 | 49 | 2.0E-10 | ||
CDD | 45 | 99 | 55 | 7.87203E-22 | – | |
MobiDBLite | 103 | 143 | 41 | - | – | |
Pfam | 136 | 305 | 170 | 1.2E-44 | ||
Gene3D | 149 | 319 | 171 | 6.5E-50 | ||
ProSiteProfiles | 151 | 320 | 170 | 54.835 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
Biological process | Chromatin organization | Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0358500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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