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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0201999 |
| Transcript ID | Lj0g3v0201999.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: histone deacetylase 19-like [Glycine max] gi|356551138|ref|XP_003543935.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 4 | 460 | 457 | 2.60E-213 | ||
| PANTHER | 13 | 427 | 415 | 0 | – | |
| PANTHER | 13 | 427 | 415 | 0 | ||
| Gene3D | 15 | 392 | 378 | 2.20E-129 | ||
| SUPERFAMILY | 18 | 382 | 365 | 2.45E-126 | – | |
| CDD | 23 | 328 | 306 | 0 | – | |
| Pfam | 37 | 325 | 289 | 4.40E-81 | ||
| PRINTS | 39 | 56 | 18 | 3.70E-65 | ||
| PRINTS | 72 | 90 | 19 | 3.70E-65 | ||
| PRINTS | 103 | 120 | 18 | 3.70E-65 | ||
| PRINTS | 124 | 144 | 21 | 3.70E-65 | ||
| PRINTS | 146 | 169 | 24 | 1.40E-23 | ||
| PRINTS | 165 | 181 | 17 | 3.70E-65 | ||
| PRINTS | 178 | 193 | 16 | 1.40E-23 | ||
| PRINTS | 224 | 237 | 14 | 3.70E-65 | ||
| PRINTS | 241 | 259 | 19 | 3.70E-65 | ||
| PRINTS | 263 | 273 | 11 | 1.40E-23 | ||
| MobiDBLite | 385 | 420 | 36 | – | – | |
| MobiDBLite | 432 | 459 | 28 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Histone deacetylase activity | Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes. | ||
| Biological process | Histone deacetylation | The modification of histones by removal of acetyl groups. |
Expression pattern of Lj0g3v0201999.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0201999.1, powered by CORGI.
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