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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0176200 |
| Transcript ID | LotjaGi1g1v0176200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|G7J4T5|G7J4T5_MEDTR Histone deacetylase; Found in the gene: LotjaGi1g1v0176200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:33810366..33815019) extracted from Lotus japonicus Gifu genome v1.2.
AGGGGAGGGGAAAGGGACACGAGGGGTTTTGGGTTCAATTGAATTTTGATTCGATTCGATTTGAGGCATGGCGGAGAGTG ACGGTGGCGCTTCGCTACCGTCGGTGGGTAGCGACGCCGTGAAGCGGAGTGTGACCTATTTCTACGAACCCCAAATCGGC GACTACTACTACGGCCAAGGCCACCCAATGAAACCGCACAGAATCCGCATGGCGCACGAGCTCATCATCAACTACTCCCT CTTCCGCCGCATGCAGATCAACCGTCCATACCCCGCCGCCGTCGAGGACATCTGCCGCTTTCACTCCGACGACTACGTCG ACTTCCTCGCCTCCGTCTCGCCGGAAATCCTCTCCGAGCCCACCCACTCTCACTACCGCCAGCTCAAGCGCTACAACGTC GGTGAGGACTGTCCTGTTTTCGACGGACTCTTCGATTTCTGCCAGGCTTCCGCCGGTGGATCCATCGGCGCCGCCGTCAC GCTCAACCACTCCCTCGCCGACATCGCGATCAACTGGGCCGGTGGCTTGCACCATGCGAAGAAGGCTGAGGCCTCTGGGT TTTGCTACGTCAATGACATCGTCCTGGGAATTCTCGAGCTTCTCAAGGTTCACAGGGTATGCTATTTTATTTTCCCTTCT TTTTGAATTATCTCTCATTTTTTTTATTGTTTTAATTTATAAACATTCGATATCCGGTCCCTTTGAACGTCGTTAGATTC GGGATTTGAATGCCGTCTGATTCGGGATTCCAGAATAAGTTTTATTTTATTTTATTTTCTCGTAAAAGGCTAGTCTTGTT ATTTTCCCTTCTTTTTGAATTATCTCTCATATTTTTATATTGTTTTAATTTATAAACATTTGATATCCGGTCCCTTTGAA CGCCGTTAGATTCGGGATTTGAATGCCGTCTTATTTGGGATTCCAGAATAAGTTTTATTTTATTTTATTTTCTCGTAAAA GGCTAGTCTTGTTATTTTCCCTTCTTTTTGAATTGTCTCTCATGTTTTTATATTGTTTTAATTTATAAACATTCGATATC CGGTCACCCTTTGAACGCCGTTAGATTCGGGATTTGAATGCTGTATGATTCGAGATTTTAGAATAAGTTTTATTTTATTT TATTTTCTCGTAAAAGGCTAGTCTTGTTTTTTTCTTTTAATCAAATTCTTTTATTCTACTTTAATTTTTTTCGAGTGGAA ATGTTAGCGTACGAGGAAGAATAAGTAAATGTAAAACGGAAAAAAAGAAATAGAAAAAAATTAGGGAAAAAGATGTAAAA TTACGGAAATTTGGAAATGCTAAATAGTATGAAGACTAGTAACACGAAATTCGTTTATTCGTCAATTTTATAATTCGAGC TATCAATCATTTTCCTATACCCTAATGTATTGTTTCCCTCACGTGTTCCCAAAATTCATGGATACTAGATGACATGGACA CTATAATAAGATTATAGGCATGATATGGATAGAATTATAACATATAAAATTAATATAATAGCACAAAATCTTTAATTGAA GGAGAGAATCAAAGTTTTAAAAATTAACATGAGGCATCATGGATAGAGTAAAATCCAATCACTTGGTATTTCCCATTTCC ATTGTAAAACGGAATGTAAAGTGTTTGTGAATTTTCTGATACGAATGTAAAGTGTTTGTGAATTTTCATAGTTGTAATCT CAGTGCTTGGTTTGTTATTTAATTATTTATCACATGCCTGTTCACACTATATGTTTATGTTACTGGCCAGCGTGTGCTGT ATGTTGATATTGATGTTCACCATGGAGATGGCGTTGAGGAGGCATTCTACACTACTGATAGAGTGATGACAGTGTCATTT CACAAGTTCGGGAATTTTTTCCCAGGAACTGGGCACATCAAGGACACTGGGCTGGGTCCTGGAAAAAACTATGCTATAAA CGTCCCGCTAGATGATGGAATGGATGATGTGAATTTCCGTGATCTGTTCCGCCCCATCATTCGAAAAGTCATGGAGGTTT ACCAACCTGATGCTGTTGTTCTTCAATGTGGAGCTGATTCATTGTCCGGCGACAGGTTGGGCTGCTTCAACTTGTCTGTG AAGGGTCATGCAGATTGCCTTCGCTTCCTTAGATCTTACAATGTCCCTCTAATGCTCTTGGGTGGGGGAGGATACACGGT CCGGAGCGTTGCTCGATGCTGGTGTTATGAGGTCCCTGGCTTTCTCTGCTTAGGCAGGATTATGATTAGTGCATTTTGGT GATGGTCTGATGTTACTTATTGCTTACAATTTTGCTTTTCTTTGTTTTAGACTGCGGTGGCAGTAGGAGTGGAGCTGAGT AATAAGTTGCCATTCAATCAATATTATGAATTTTTTGGCCCTGAGTATACACTTCATGTCAGCCCTAGAAGCATGGCGAA CCTAAACACACCCCAGGATTTGGAACTGATTAGGTGATTTTACATCATTACTTTTTTGTTGAATTACAATTTATGATTCT GAGTTCAATTTTTTAATCATAAACATGGAAAATATTCTGGCCTTGAATCACTATGACTCTGGTTACTCATGTACTATATT TTTTTGCTGCCAGGTTACATTTTGAATTGTCATAAGCTATATAGTATACACTGGGAATTTCCCTTTCCACTATTTGAATT GTGCTGGTTGATAATACATATTGCATTTTTCTAGACATCAAATATCTGAAGCCACCATGGCATGTTAAGTCTGCGAGTTT GTGTGTGTATATTGGGGGATGGGCTACACCGGGAAGTGGGTGCAACTTGCAACCACTTTAGATTGTGAATTGTGATCTAT ATTCACATTTCCTTTCACCTTAGCCAAAAGAATAATATGGAGCTTTCCAATTTCAGATCACAGTTACATGTAGAGTGTGA TCTTATCATTGCCACTGAGCGATAACTCTTGTGGTAACTTGGGTCCACATCAAAGGTGGGGGACTGGATTACCAGCTTCA TATCTGCGTTCACCTTGCTAGTAATTGTTATCTCTCTACAGACTAGAAGGATTGCTTTTCTGTTACTTTGAGGTTGAGCC TTTTATGTGTGGTGACAACATGATTTGTTTTAATGACGGAATTTCTATTCTTTCTGATGCTGTAATGTGTTATGCGTATG CTTCTGCTGATAATTGCTCAGATTTTCTTGGAGAAAACATTGGTTTAAAACTTCAAATGGATTCTTTTAATTGATTTCCA GGAATCTGTTGCTTGAGCAAATTTCCAGACTCCCCCATGCTCCCAGCATACCTTTTCAGACAACACCGTCAACCATAGAA GTTCCAGAAGAGGTTTGTACTTCCTAAACTAGTTGCATTTATTGTTCCTCAGCTAAAACATAAGACAAACTTATGTTATT GTCTAGTTGTTCCTCTGCCATTTTCTTTGTTTGATTTTATTTAGTAAATGGATGCAGGAAGAGGAGGACATGGATACAAG ACCAAAACGTCGCATATGGAGCAGTGGAGAAGTTGATTCTGACTATGAAGATGAGGCACCTAGTCCACCGAACTCACATT CAACATCCAATATAAGGTGAGGGTTATATATTATTAGAAAGCTGAATAGTAAATTCACTTGGTTTCTCACTCTTTACAGT GTAGGAGTAGGTGTATAATTTTGGGTTTGTCCTTTGACTGTTACCTTAGTGCTCTATGTAGCCTGGAGCCGAGACTCGAG TCTCATTGTTAATGGAAGTATTGTCTTGATATATGATAATGCATGAAAGGTTCTAGATGAGACGAATGAAACAGACTAAC ATAAACTCATTAGATTCTTTTATTGCAAAGAGCTTTGTGTTGTATGAAAAAGGAGGATACAAGTTAGGAGAAGGGTACTT CTGACATTCTTATGTTTATGATCAATAATTTGATATTAAAAAAGATAGTATTGCTATGGAAAAGTTTATATGAGGGTGTG ATATGCTTAAGCTTTATTATGTATATCAGATTGGAAAGTGCAACATGCCTAATATTTTAGGGTGGCAAAGTGGATTTTTG ATCTTTAATTAAGATTATTGTTTAATTAGAATTCATGTTAGGAGAACATGCTGATTAGATCTTATGAAATTTGCAAATGA ATTTTACTACTATTTGGTTTCTTTGGTTAAAGGCTAAGAAACTCACACTTCATGTCAGCAGGCATCTGGCAGATGAGATG GAAGATGATGACTCGGATGCGACTCCATCACCTTAATACTTCATAGAAGATAGCAAGTTTAGATTAACATGTTTTCGTCA GTGGGAAGCTCTTTGCTGTTTGGACCAATCATACATACATATTTTCGACCTATATGTGTACATTTTTAGGTTTAAAAGTA TAGTATGAAGCAGTGTTGCCTGAGTATGGGGCCATTGTGGTGGTGGGTTTTCACCTTTCAGAACATCAATCTGAAAATGT CATAGCCTTGCATGTTTTGCTCTGGTGGAGCATAGGATTTGCATCTATGGCTTCCAACCTAAGTGAACTTGGTGGAGGCA GATGAGAATTTCCAGATCCACCTTCACTTTGTAGGTTCCAAATTTTGGAGGTTATTTGCTGTTTCTACCGTGTAAAATGG CACATACCTAAAAAAGAAATATTACAAACTCATAGTAGTCTGACATTTAATATTACAAACATGGATAAATATATTCCTTT CATTTGATATTAAA
CDS sequence (LotjaGi1g1v0176200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAGAGTGACGGTGGCGCTTCGCTACCGTCGGTGGGTAGCGACGCCGTGAAGCGGAGTGTGACCTATTTCTACGA ACCCCAAATCGGCGACTACTACTACGGCCAAGGCCACCCAATGAAACCGCACAGAATCCGCATGGCGCACGAGCTCATCA TCAACTACTCCCTCTTCCGCCGCATGCAGATCAACCGTCCATACCCCGCCGCCGTCGAGGACATCTGCCGCTTTCACTCC GACGACTACGTCGACTTCCTCGCCTCCGTCTCGCCGGAAATCCTCTCCGAGCCCACCCACTCTCACTACCGCCAGCTCAA GCGCTACAACGTCGGTGAGGACTGTCCTGTTTTCGACGGACTCTTCGATTTCTGCCAGGCTTCCGCCGGTGGATCCATCG GCGCCGCCGTCACGCTCAACCACTCCCTCGCCGACATCGCGATCAACTGGGCCGGTGGCTTGCACCATGCGAAGAAGGCT GAGGCCTCTGGGTTTTGCTACGTCAATGACATCGTCCTGGGAATTCTCGAGCTTCTCAAGGTTCACAGGCGTGTGCTGTA TGTTGATATTGATGTTCACCATGGAGATGGCGTTGAGGAGGCATTCTACACTACTGATAGAGTGATGACAGTGTCATTTC ACAAGTTCGGGAATTTTTTCCCAGGAACTGGGCACATCAAGGACACTGGGCTGGGTCCTGGAAAAAACTATGCTATAAAC GTCCCGCTAGATGATGGAATGGATGATGTGAATTTCCGTGATCTGTTCCGCCCCATCATTCGAAAAGTCATGGAGGTTTA CCAACCTGATGCTGTTGTTCTTCAATGTGGAGCTGATTCATTGTCCGGCGACAGGTTGGGCTGCTTCAACTTGTCTGTGA AGGGTCATGCAGATTGCCTTCGCTTCCTTAGATCTTACAATGTCCCTCTAATGCTCTTGGGTGGGGGAGGATACACGGTC CGGAGCGTTGCTCGATGCTGGTGTTATGAGACTGCGGTGGCAGTAGGAGTGGAGCTGAGTAATAAGTTGCCATTCAATCA ATATTATGAATTTTTTGGCCCTGAGTATACACTTCATGTCAGCCCTAGAAGCATGGCGAACCTAAACACACCCCAGGATT TGGAACTGATTAGGAATCTGTTGCTTGAGCAAATTTCCAGACTCCCCCATGCTCCCAGCATACCTTTTCAGACAACACCG TCAACCATAGAAGTTCCAGAAGAGGAAGAGGAGGACATGGATACAAGACCAAAACGTCGCATATGGAGCAGTGGAGAAGT TGATTCTGACTATGAAGATGAGGCACCTAGTCCACCGAACTCACATTCAACATCCAATATAAGCAGGCATCTGGCAGATG AGATGGAAGATGATGACTCGGATGCGACTCCATCACCTTAA
Protein sequence (LotjaGi1g1v0176200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAESDGGASLPSVGSDAVKRSVTYFYEPQIGDYYYGQGHPMKPHRIRMAHELIINYSLFRRMQINRPYPAAVEDICRFHS DDYVDFLASVSPEILSEPTHSHYRQLKRYNVGEDCPVFDGLFDFCQASAGGSIGAAVTLNHSLADIAINWAGGLHHAKKA EASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGNFFPGTGHIKDTGLGPGKNYAIN VPLDDGMDDVNFRDLFRPIIRKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVPLMLLGGGGYTV RSVARCWCYETAVAVGVELSNKLPFNQYYEFFGPEYTLHVSPRSMANLNTPQDLELIRNLLLEQISRLPHAPSIPFQTTP STIEVPEEEEEDMDTRPKRRIWSSGEVDSDYEDEAPSPPNSHSTSNISRHLADEMEDDDSDATPSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 447 | 441 | 4.5E-254 | – | |
| PANTHER | 7 | 447 | 441 | 4.5E-254 | – | |
| PIRSF | 7 | 464 | 458 | 1.0E-199 | ||
| Gene3D | 18 | 395 | 378 | 7.9E-155 | ||
| SUPERFAMILY | 21 | 386 | 366 | 5.76E-122 | ||
| CDD | 25 | 334 | 310 | 0.0 | – | |
| Pfam | 39 | 332 | 294 | 2.5E-82 | ||
| PRINTS | 41 | 58 | 18 | 7.0E-59 | ||
| PRINTS | 74 | 92 | 19 | 7.0E-59 | ||
| PRINTS | 109 | 126 | 18 | 7.0E-59 | ||
| PRINTS | 130 | 150 | 21 | 7.0E-59 | ||
| PRINTS | 152 | 175 | 24 | 3.5E-24 | ||
| PRINTS | 171 | 187 | 17 | 7.0E-59 | ||
| PRINTS | 184 | 199 | 16 | 3.5E-24 | ||
| PRINTS | 230 | 243 | 14 | 7.0E-59 | ||
| PRINTS | 247 | 265 | 19 | 7.0E-59 | ||
| PRINTS | 269 | 279 | 11 | 3.5E-24 | ||
| MobiDBLite | 391 | 466 | 76 | - | – | |
| MobiDBLite | 412 | 427 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Histone deacetylase activity | Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes. | ||
| Biological process | Histone deacetylation | The modification of histones by removal of acetyl groups. |
Expression pattern of LotjaGi1g1v0176200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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