Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0230000 |
Transcript ID | LotjaGi4g1v0230000.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0L9TQL1|A0A0L9TQL1_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0230000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54011773..54016462) extracted from Lotus japonicus Gifu genome v1.2.
CTAAGATGTTATAAATCTATAACGAAAACTGGCCCAATAGTTGAACTATATAAAACCCCCCAATTCTGACGCAGGGTTTT GTTTGCGCATTCGATCTCTCAAATTCTCGGGCGCTTTGTGTTGTTGTTGCAGAGTGAGAGTGAGCAAGAGCGAAATGGTT ATGGAGGAGGAGAGAAAGATAGAGGAAGGTGCTTCCCTTCCATCGGGACCAGACGCGAAGAAGAAGAGAGTCACCTACTT CTACGAACCATCGATCGGCGATTACTACTACGGCCAAGGCCACCCGATGAAACCCCACCGGATGCGTATGGCCCACAATC TCATCGTCCATTACTCCCTCCACCGCCGCATGGAGATCAATCGCCCCTTCCCCGCCGGCCCTGACGACATCCGCCGCTTC CACTCCGACGACTACGTCGAGTTTCTTGCCTCTGTCACCCCTGAGACTCTCTCGGAGCCAATCTTCGCCCGCCAGCTTAA GCGCTTCAACGTTGGTGAGGATTGTCCTATTTTTGATGGTCTTTTCAATTACTGCCAGGCCTCCGCCGGTGGCTCCCTCG GCGCCGCCGTCAAGCTCAACCGCGGTGAGGCTGACATTGCTATCAATTGGGCTGGGGGCATGCATCATGCTAAGAAGTGT GAAGCTTCTGGCTTCTGTTATGTCAATGACATTGTGCTTGGTATCCTCGAGCTTCTCAAAGTTCATAGGGTAATCCTCTT TTTCACAGCGATTTTGTTTACTTTTCTGCTTGTGATGCATAGTTTATTGCCTTGTGGATTATAGACCTAGGCTCTGTTTT TTTAAATTTATGTTGTTGAATTGTAGTTTGCAAACCAGGGTTTAACCCTAATTGAATTTCTTCCCATTTATACTCCCAGC CACCCAAAATCATGTTCAATCTGGAATGAATTTGCCAAACATGTTAATGCTGTTGTAAAAATTGCCAGATATATACTTTG GGACCCCTTGGCAAGGAATTAAGCTTGGCACAAGAGAAAGAAAAGGCATCTTCACAAGCCCCAGTTTCTGGGGTGTCTTG TGTTCCTAGCCGGGCACCCATGATACTTCATTGACCTAGGGATTAAGTTCTCTACCACAGCTGTACCACCACACCAGTAT TGTCAAATAGCCGACATAGCGGCGCTTTAGGGTAGTGCTCTGCCATTATCCGCTATTGTCCACTCAGAGGGCTTTCCATA GCGGATTTTTGGCTTTCTGCTATTTTCTGCGATATGTGATCAACAACATTTTACCACTCCAATACTATTATCAGGTGGTT TTGGTGGCGGATGTTTGTTCGTCCCCATCTTCTTCTTTGCTAACTTTGTCACCCTGGCTGCTACACGAGCCTTCATGTGC TTCGAACATAATTCTTGGCATGAGGAACCATCCACAATGACACCATCGTACGGGAGTGGCAGCCTTAGTGAGAGATGGAG CGGTAGGTTCCCATAGTAGTTAGTAGTTTAGTCAGTGGAAGCACACATGGAAAGGAGGAGAGGACAAATCAGAGACTGAA TTTCAAATTGACTCTGATTGGCGTAGTGGGTGAGGTCCATATTTCTCCAATCAGCTTCGAGCCCTAACTGGTGACCTCGG CTTTATCCGGATTCCGGTGTGTCTTTTGCACCTTCAGTATATGGAAAACTGATGATAACTTACCTTCTCCTTGAGGACAA GGTGAATGTTCAGGGGCAGATTAATAGTTTAGTTAGTTTATTGACAGAGATAGGTAGAGTATAGGGGAGGGAGTATTATT AATAATAGAAAGTTGAGGAGGATTATCATCTTTGGGATAATTGTAATTGACAATTAGGGAGTGGTGTTGCGGAATTACTC AGCAAACCAAATCATAGTTTCAATTGATATTCTTGAATAACATCAGTTCTGTTCTTCTGCATTGGCTGGTTCCTCTCAAC ATAATCCTTGCCACATCTTTTTTGGCTCAAGTCCTTTAACAGTGCACATTTGTCCTTTTCAATTTTTCATAGTTCTGTGT GAAAATCAAATTTATGTTTCTGCTTACTATTACTTGTATTGTGAGTTCTTCTTTTGTTCTGCATGTCATGTGTTTTCTTC CTTTCATATATTTATTGTTCTCACTATCTGTTCTATATGACTTGGCAGCGTGTGCTGTACATTGACATAGATGTTCACCA TGGTGATGGTGTGGAAGAGGCCTTCTACACAACTGATAGAGTGATGACAGTATCTTTCCATAAGTTTGGGGACTTTTTCC CCGGCACTGGACACATCAAGGACATTGGAGTGGGCTCAGGAAAGCATTATGCTCTCAATGTCCCATTAAATGATGGAATG GATGATGAAAATTTCCGTGTTCTGTTTCAAGCTGTCATTCAAAAAGTCATGGAGGTTTATCAGCCCGAAGCGGTTGTTCT TCAATGTGGAGCTGATTCCTTGTCTGGTGATAGGTTGGGTTGCTTCAACTTGTCTGTGAAAGGTCATGCAGATTGCCTTC GTTTCGTTAAATCTTTCAATGTTCCTCTAATGATTGTTGGTGGCGGAGGATATACGATTCGGAATGTGGCTCGTTGTTGG TGTTATGAGGTCTCTTTCTTTCTGTTCTTGGGCAGGACTAAATGTGATTTGGTATTAGTTTTAACGTTTCTTATTTGATC ACATACTGTTTACTTGTTTTAGACTGCAGTAGCAGTAGGAGTGGAGCCTGATAACAAGCTGCCTTACAATGAATACTATG AGTATTTTGGCCCAGATTATACTCTCCATGTTGATCCAAGCAACATGGAGAACCTAAACACACCCAAGGATTTGGAAAGA ATAAGGTGCTTTTACTATTAATTTCTTTTTGTTTGGATTAGAATTGTTTATTCTGATCTCCTTATTTATTTATTTATTTA TTATAATTATGGTATAAATTAACAGTCATAAGTAGCTACGAATGTAATTATTGAAATGGATTGTATTTTGTTGCTTACTC AAATGCATTATGTTGCAGCCAAGTCTCATCAGTCATCCCTTCTGTGATCGATGATATTTTCAGAATACTATGAATAATTG CATAAACAATCTATAGTTTATATCTGGCATTGTTGTTTCATGTTGATTGTGAGGACATTGTATTGTCTGAGATAATCCTT CTTTGTGGGCGAAGGGGGGAGTTTGCTATTTAATGTACTTAAAATACAGATAGTCCTTTAGATGGAAAGGAAGGTCTCTG GTACTGAATGCTGTTCTGTTCTGTCCAACATGGAGCTTCATATGTATGGTCTTATTTTTTAATTGAGGGATTTTATGTTC ATTCTCATATCATGTGTCACTTTTGCGGCTGAATATAACTGCTACATTTCCCTTGGAGCCAGCACTGGCTAAATGGATTC TTTTTTACTTTATTTCTAGGAACACTTTACTAGAACAGATTTCCCGACTTCCCCATGCTCCCAGTGCACCTTTTCAGACA ACACCATCAACCACAGAAGTGCCAGAGGAGGTAGGTACTTAGTGACAGTCGCAGTTATTGTCTTCCTGTTTTTCTCTTGT TTTTGTTTGATTTATTAAGTATGGATTCAGGAGGAAGAGGGCATGGATAGAAGACCACAGTGTCGCAAGTGGAATGGTGA AGAGTATGATTCTGATTTTGATGAAGATGAAAAGGATGACCTCAAGCACTCAAAATTAACTGACCATATGAGGTAATGGT TATATATTGTTTGGAATCTGAATAAAAAATCCATTTAGTTTATTAGTCCCTTTATTCAGTAGGTGAATTGTAGGTTTGTC ACCCAATAGTGGTTAGTTGCAGTGGATATTTATCAAGGTTTTGAATCATGAACTTATCACTTTGAGGAGGGTTTTACTTA CCTGTCTACCACTCTCTACTTGAAGATTAGTGAGAGTTGGTTATCTTTGTTAGAATATCTGGTCTAAGGTCCACAAAGAT GTGGTTTGTAACTTGTTCATGAGATTGTGACCACTGTGATTCTATCTATCCTGATAAGTGAGAAGTACTCTAGAGTCAGT TTGAGTAGTTTTATCTTGAGTTCTTGACAGTGCAGCAGTCTTGGCCGTTTAATGAATTTAATAATCATCTGGCTCCTATT GTGAAAGCTAAAAATTATGTTGTGTTTTGTTGCAGGGATGTTTCAAATGACATGGAAGAAGAGAAGCCAGTAGTGCATCC ACCATCTTGATGTTGATGGAACAATGCCAGTTCCTGCACAAGATGTTTGTACTTTGTATTATGCTATTTAAACATGAACT ATTACGTTTATGAGGGTGGTAATTATCGAGTTAAAAGATATTAAACAATTCTCGAGAACGCGAATATAATGTCACTGATC ACCGACGCAGGTGTAACATAGAGAAACATGGTTTTGGGCCCAAATTGCCCCCAAGGTTTTTCAAACGCTCCAGAATTTAG TTTCTGGAAAATTATAATTTTCATTATACTTCTGAAACTTAGTAATCTGCTGCAAGCTATGAAAGCTACTTGTAATTTTT GGGAAGGTTCCCTTTTATAGAGAGAAAGACTGGGACTTGCAGTTTTTGCCCATCACCTCTGTTATATTGTTATCAAGGAT AGAATGAAGTGCCTCCAAAGTTTTCTGCTAATTTATCACAAGACAGCAGGGAAAGTTTCTTCCTGAATCTTTAGTTTCAT TGTTATCTAATCGAATTATCAAGATTAAAATATTAAGTCATTTGACTTTT
CDS sequence (LotjaGi4g1v0230000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTATGGAGGAGGAGAGAAAGATAGAGGAAGGTGCTTCCCTTCCATCGGGACCAGACGCGAAGAAGAAGAGAGTCAC CTACTTCTACGAACCATCGATCGGCGATTACTACTACGGCCAAGGCCACCCGATGAAACCCCACCGGATGCGTATGGCCC ACAATCTCATCGTCCATTACTCCCTCCACCGCCGCATGGAGATCAATCGCCCCTTCCCCGCCGGCCCTGACGACATCCGC CGCTTCCACTCCGACGACTACGTCGAGTTTCTTGCCTCTGTCACCCCTGAGACTCTCTCGGAGCCAATCTTCGCCCGCCA GCTTAAGCGCTTCAACGTTGGTGAGGATTGTCCTATTTTTGATGGTCTTTTCAATTACTGCCAGGCCTCCGCCGGTGGCT CCCTCGGCGCCGCCGTCAAGCTCAACCGCGGTGAGGCTGACATTGCTATCAATTGGGCTGGGGGCATGCATCATGCTAAG AAGTGTGAAGCTTCTGGCTTCTGTTATGTCAATGACATTGTGCTTGGTATCCTCGAGCTTCTCAAAGTTCATAGGCGTGT GCTGTACATTGACATAGATGTTCACCATGGTGATGGTGTGGAAGAGGCCTTCTACACAACTGATAGAGTGATGACAGTAT CTTTCCATAAGTTTGGGGACTTTTTCCCCGGCACTGGACACATCAAGGACATTGGAGTGGGCTCAGGAAAGCATTATGCT CTCAATGTCCCATTAAATGATGGAATGGATGATGAAAATTTCCGTGTTCTGTTTCAAGCTGTCATTCAAAAAGTCATGGA GGTTTATCAGCCCGAAGCGGTTGTTCTTCAATGTGGAGCTGATTCCTTGTCTGGTGATAGGTTGGGTTGCTTCAACTTGT CTGTGAAAGGTCATGCAGATTGCCTTCGTTTCGTTAAATCTTTCAATGTTCCTCTAATGATTGTTGGTGGCGGAGGATAT ACGATTCGGAATGTGGCTCGTTGTTGGTGTTATGAGACTGCAGTAGCAGTAGGAGTGGAGCCTGATAACAAGCTGCCTTA CAATGAATACTATGAGTATTTTGGCCCAGATTATACTCTCCATGTTGATCCAAGCAACATGGAGAACCTAAACACACCCA AGGATTTGGAAAGAATAAGGAACACTTTACTAGAACAGATTTCCCGACTTCCCCATGCTCCCAGTGCACCTTTTCAGACA ACACCATCAACCACAGAAGTGCCAGAGGAGGAGGAAGAGGGCATGGATAGAAGACCACAGTGTCGCAAGTGGAATGGTGA AGAGTATGATTCTGATTTTGATGAAGATGAAAAGGATGACCTCAAGCACTCAAAATTAACTGACCATATGAGGGATGTTT CAAATGACATGGAAGAAGAGAAGCCAGTAGTGCATCCACCATCTTGA
Protein sequence (LotjaGi4g1v0230000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVMEEERKIEEGASLPSGPDAKKKRVTYFYEPSIGDYYYGQGHPMKPHRMRMAHNLIVHYSLHRRMEINRPFPAGPDDIR RFHSDDYVEFLASVTPETLSEPIFARQLKRFNVGEDCPIFDGLFNYCQASAGGSLGAAVKLNRGEADIAINWAGGMHHAK KCEASGFCYVNDIVLGILELLKVHRRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGSGKHYA LNVPLNDGMDDENFRVLFQAVIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFVKSFNVPLMIVGGGGY TIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVDPSNMENLNTPKDLERIRNTLLEQISRLPHAPSAPFQT TPSTTEVPEEEEEGMDRRPQCRKWNGEEYDSDFDEDEKDDLKHSKLTDHMRDVSNDMEEEKPVVHPPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PIRSF | 5 | 465 | 461 | 3.5E-208 | ||
PANTHER | 11 | 452 | 442 | 9.1E-270 | – | |
PANTHER | 11 | 452 | 442 | 9.1E-270 | – | |
Gene3D | 22 | 397 | 376 | 8.2E-160 | ||
SUPERFAMILY | 25 | 389 | 365 | 2.16E-126 | ||
CDD | 29 | 336 | 308 | 0.0 | – | |
Pfam | 43 | 334 | 292 | 1.1E-84 | ||
PRINTS | 45 | 62 | 18 | 7.0E-60 | ||
PRINTS | 78 | 96 | 19 | 7.0E-60 | ||
PRINTS | 111 | 128 | 18 | 7.0E-60 | ||
PRINTS | 132 | 152 | 21 | 7.0E-60 | ||
PRINTS | 154 | 177 | 24 | 1.1E-23 | ||
PRINTS | 173 | 189 | 17 | 7.0E-60 | ||
PRINTS | 186 | 201 | 16 | 1.1E-23 | ||
PRINTS | 232 | 245 | 14 | 7.0E-60 | ||
PRINTS | 249 | 267 | 19 | 7.0E-60 | ||
PRINTS | 271 | 281 | 11 | 1.1E-23 | ||
MobiDBLite | 391 | 468 | 78 | - | – | |
MobiDBLite | 411 | 429 | 19 | - | – | |
MobiDBLite | 436 | 468 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Histone deacetylase activity | Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes. | ||
Biological process | Histone deacetylation | The modification of histones by removal of acetyl groups. |
Expression pattern of LotjaGi4g1v0230000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…