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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0005979 |
| Transcript ID | Lj0g3v0005979.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Glycine max] gi|356519887|ref|XP_003528600.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 14 | 14 | – | – | |
| PANTHER | 112 | 131 | 20 | 0 | – | |
| PANTHER | 112 | 131 | 20 | 0 | – | |
| ProSiteProfiles | 116 | 149 | 34 | 8.276 | ||
| PANTHER | 148 | 455 | 308 | 0 | – | |
| PANTHER | 148 | 455 | 308 | 0 | – | |
| ProSiteProfiles | 150 | 184 | 35 | 5.349 | ||
| ProSiteProfiles | 185 | 219 | 35 | 9.087 | ||
| Pfam | 190 | 215 | 26 | 2.10E-04 | ||
| TIGRFAM | 190 | 216 | 27 | 0.0012 | ||
| Pfam | 218 | 242 | 25 | 6.30E-04 | ||
| ProSiteProfiles | 288 | 318 | 31 | 7.498 | ||
| TIGRFAM | 293 | 319 | 27 | 0.0015 | ||
| Gene3D | 316 | 346 | 31 | 4.70E-08 | ||
| Pfam | 319 | 362 | 44 | 7.20E-09 | ||
| ProSiteProfiles | 319 | 353 | 35 | 11.071 | ||
| TIGRFAM | 321 | 354 | 34 | 1.10E-04 | ||
| ProSiteProfiles | 354 | 388 | 35 | 7.004 | ||
| ProSiteProfiles | 389 | 419 | 31 | 7.224 | ||
| Pfam | 420 | 468 | 49 | 1.20E-07 | ||
| ProSiteProfiles | 420 | 454 | 35 | 9.46 | ||
| TIGRFAM | 422 | 455 | 34 | 0.0019 | ||
| ProSiteProfiles | 455 | 489 | 35 | 8.32 | ||
| Gene3D | 476 | 477 | 2 | 4.70E-08 | ||
| PANTHER | 493 | 800 | 308 | 0 | – | |
| PANTHER | 493 | 800 | 308 | 0 | – | |
| ProSiteProfiles | 522 | 556 | 35 | 11.378 | ||
| Pfam | 522 | 569 | 48 | 1.20E-07 | ||
| TIGRFAM | 524 | 558 | 35 | 1.00E-05 | ||
| ProSiteProfiles | 557 | 587 | 31 | 5.985 | ||
| ProSiteProfiles | 592 | 622 | 31 | 7.892 | ||
| Gene3D | 595 | 685 | 91 | 4.70E-08 | ||
| SUPERFAMILY | 603 | 782 | 180 | 4.22E-05 | ||
| Pfam | 622 | 670 | 49 | 3.70E-09 | ||
| ProSiteProfiles | 623 | 657 | 35 | 11.213 | ||
| TIGRFAM | 626 | 658 | 33 | 2.10E-06 | ||
| ProSiteProfiles | 658 | 692 | 35 | 10.271 | ||
| TIGRFAM | 660 | 693 | 34 | 9.60E-05 | ||
| ProSiteProfiles | 693 | 723 | 31 | 5.678 | ||
| Gene3D | 753 | 780 | 28 | 4.70E-08 | ||
| ProSiteProfiles | 759 | 793 | 35 | 6.73 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0005979.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0005979.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.