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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0015519 |
| Transcript ID | Lj0g3v0015519.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357487221|ref|XP_003613898.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 72 | 72 | 6.50E-171 | – | |
| PANTHER | 1 | 72 | 72 | 6.50E-171 | – | |
| ProSiteProfiles | 9 | 43 | 35 | 10.106 | ||
| Pfam | 11 | 40 | 30 | 4.20E-05 | ||
| TIGRFAM | 12 | 45 | 34 | 8.90E-07 | ||
| ProSiteProfiles | 44 | 74 | 31 | 6.522 | ||
| Gene3D | 52 | 234 | 183 | 2.80E-08 | ||
| PANTHER | 101 | 263 | 163 | 6.50E-171 | – | |
| PANTHER | 101 | 263 | 163 | 6.50E-171 | – | |
| ProSiteProfiles | 103 | 137 | 35 | 10.731 | ||
| TIGRFAM | 106 | 138 | 33 | 5.80E-07 | ||
| Pfam | 107 | 263 | 157 | 5.70E-11 | ||
| ProSiteProfiles | 138 | 172 | 35 | 10.413 | ||
| TIGRFAM | 140 | 174 | 35 | 3.40E-06 | ||
| ProSiteProfiles | 173 | 207 | 35 | 10.49 | ||
| TIGRFAM | 176 | 208 | 33 | 3.70E-07 | ||
| ProSiteProfiles | 208 | 242 | 35 | 10.643 | ||
| TIGRFAM | 210 | 244 | 35 | 1.20E-06 | ||
| Coils | 228 | 248 | 21 | – | – | |
| ProSiteProfiles | 243 | 273 | 31 | 5.207 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0015519.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0015519.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.