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Lj0g3v0021579.1

Overview

Field Value
Gene ID Lj0g3v0021579
Transcript ID Lj0g3v0021579.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cicer arietinum] gi|502147415|ref|XP_004506774.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 146 146 – –
PANTHER
PTHR21649:SF6
4 89 86 1.00E-177 –
PANTHER
PTHR21649
4 89 86 1.00E-177
IPR001344
SUPERFAMILY
SSF103511
53 89 37 6.67E-58 –
Gene3D
G3DSA:1.10.3460.10
57 89 33 2.90E-74
IPR023329
Pfam
PF00504
65 261 197 1.20E-51
IPR022796
PANTHER
PTHR21649:SF6
129 291 163 1.00E-177 –
PANTHER
PTHR21649
129 291 163 1.00E-177
IPR001344
Gene3D
G3DSA:1.10.3460.10
133 287 155 2.90E-74
IPR023329
SUPERFAMILY
SSF103511
133 289 157 6.67E-58 –
TMHMM
TMhelix
142 164 23 – –
Phobius
TRANSMEMBRANE
147 166 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
167 185 19 – –
TMHMM
TMhelix
179 201 23 – –
Phobius
TRANSMEMBRANE
186 205 20 – –
Phobius
CYTOPLASMIC_DOMAIN
206 291 86 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009765
Biological process Photosynthesis, light harvesting Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
Subterm of
Part of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj0g3v0021579.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0021579.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.