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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0022159 |
| Transcript ID | Lj0g3v0022159.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Glycine max] gi|356577724|ref|XP_003556973.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 460 | 460 | 4.90E-244 | – | |
| PANTHER | 1 | 460 | 460 | 4.90E-244 | – | |
| ProSiteProfiles | 42 | 75 | 34 | 5.305 | ||
| ProSiteProfiles | 111 | 142 | 32 | 5.196 | ||
| Gene3D | 131 | 207 | 77 | 3.10E-05 | ||
| ProSiteProfiles | 144 | 174 | 31 | 8.583 | ||
| Pfam | 147 | 172 | 26 | 0.017 | ||
| Pfam | 176 | 224 | 49 | 2.40E-10 | ||
| ProSiteProfiles | 177 | 211 | 35 | 11.509 | ||
| TIGRFAM | 179 | 213 | 35 | 6.60E-08 | ||
| ProSiteProfiles | 212 | 246 | 35 | 5.327 | ||
| Gene3D | 248 | 265 | 18 | 3.10E-05 | ||
| ProSiteProfiles | 251 | 281 | 31 | 9.646 | ||
| Pfam | 255 | 281 | 27 | 1.50E-06 | ||
| TIGRFAM | 255 | 280 | 26 | 7.90E-07 | ||
| Gene3D | 266 | 281 | 16 | 8.80E-09 | ||
| Pfam | 282 | 329 | 48 | 5.00E-11 | ||
| ProSiteProfiles | 282 | 316 | 35 | 11.038 | ||
| TIGRFAM | 284 | 318 | 35 | 3.70E-07 | ||
| ProSiteProfiles | 317 | 352 | 36 | 7.87 | ||
| ProSiteProfiles | 353 | 387 | 35 | 6.906 | ||
| Pfam | 356 | 380 | 25 | 0.057 | ||
| Gene3D | 382 | 441 | 60 | 8.80E-09 | ||
| SUPERFAMILY | 382 | 440 | 59 | 9.87E-08 | ||
| ProSiteProfiles | 419 | 453 | 35 | 8.539 | ||
| Pfam | 423 | 451 | 29 | 0.53 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0022159.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0022159.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.