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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0038999 |
| Transcript ID | Lj0g3v0038999.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: transmembrane protein 115-like [Glycine max] gi|356498564|ref|XP_003518120.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | – | – | |
| PANTHER | 2 | 296 | 295 | 1.60E-158 | – | |
| PANTHER | 2 | 296 | 295 | 1.60E-158 | – | |
| SUPERFAMILY | 19 | 207 | 189 | 1.57E-11 | – | |
| Gene3D | 21 | 181 | 161 | 6.90E-05 | ||
| Phobius | 24 | 48 | 25 | – | – | |
| TMHMM | 26 | 48 | 23 | – | – | |
| SMART | 49 | 147 | 99 | 3.40E-43 | – | |
| Phobius | 49 | 67 | 19 | – | – | |
| Pfam | 49 | 147 | 99 | 1.20E-31 | ||
| TMHMM | 61 | 83 | 23 | – | – | |
| Phobius | 68 | 86 | 19 | – | – | |
| Phobius | 87 | 97 | 11 | – | – | |
| Phobius | 98 | 120 | 23 | – | – | |
| TMHMM | 98 | 120 | 23 | – | – | |
| Phobius | 121 | 125 | 5 | – | – | |
| Phobius | 126 | 143 | 18 | – | – | |
| TMHMM | 127 | 149 | 23 | – | – | |
| Phobius | 144 | 162 | 19 | – | – | |
| Phobius | 163 | 180 | 18 | – | – | |
| TMHMM | 169 | 200 | 32 | – | – | |
| Phobius | 181 | 185 | 5 | – | – | |
| Phobius | 186 | 203 | 18 | – | – | |
| Phobius | 204 | 309 | 106 | – | – | |
| MobiDBLite | 255 | 278 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj0g3v0038999.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0038999.1, powered by CORGI.
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