Domain Predictions — View

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PF08551

Source: Pfam

Description

Eukaryotic integral membrane protein (DUF1751)

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006890 View details of GO:0006890 AmiGO InterPro QuickGO	Biological process	Retrograde vesicle-mediated transport, Golgi to ER	The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.	Subterm of GO:0048193
GO:0016021 View details of GO:0016021 AmiGO InterPro QuickGO	Cellular component	Integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.	Subterm of GO:0031224

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0038999.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: transmembrane protein 115-like [Glycine max] gi\|356498564\|ref\|XP_003518120.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1540.10 IPR013861 IPR022764 NON_CYTOPLASMIC_DOMAIN PF08551 PTHR13377 PTHR13377:SF4 SM01160 SSF144091 TMhelix TRANSMEMBRANE mobidb-lite	13
LotjaGi2g1v0102900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transmembrane protein 115; TAIR: AT3G07950.1 rhomboid protein-like protein; Swiss-Prot: sp\|Q8LF05\|RBL19_ARATH Rhomboid-like protein 19; TrEMBL-Plants: tr\|I3SV60\|I3SV60_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0102900	Domains CYTOPLASMIC_DOMAIN IPR013861 NON_CYTOPLASMIC_DOMAIN PF08551 PTHR13377 PTHR13377:SF7 SM01160 SSF144091 TMhelix TRANSMEMBRANE mobidb-lite	11
LotjaGi5g1v0275700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transmembrane protein 115; TAIR: AT3G07950.1 rhomboid protein-like protein; Swiss-Prot: sp\|Q8LF05\|RBL19_ARATH Rhomboid-like protein 19; TrEMBL-Plants: tr\|G7I9J5\|G7I9J5_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi5g1v0275700	Domains CYTOPLASMIC_DOMAIN IPR013861 NON_CYTOPLASMIC_DOMAIN PF08551 PTHR13377 PTHR13377:SF7 SM01160 SSF144091 TMhelix TRANSMEMBRANE mobidb-lite	11
LotjaGi5g1v0275700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transmembrane protein 115; TAIR: AT3G07950.1 rhomboid protein-like protein; Swiss-Prot: sp\|Q8LF05\|RBL19_ARATH Rhomboid-like protein 19; TrEMBL-Plants: tr\|G7I9J5\|G7I9J5_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi5g1v0275700	Domains CYTOPLASMIC_DOMAIN IPR013861 NON_CYTOPLASMIC_DOMAIN PF08551 PTHR13377 PTHR13377:SF7 SM01160 SSF144091 TMhelix TRANSMEMBRANE mobidb-lite	11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	25.00