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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0047679 |
| Transcript ID | Lj0g3v0047679.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pumilio homolog 1-like isoform X2 [Cicer arietinum] gi|502096967|ref|XP_004490876.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 434 | 434 | 0 | – | |
| PANTHER | 1 | 434 | 434 | 0 | – | |
| MobiDBLite | 269 | 317 | 49 | – | – | |
| Pfam | 282 | 691 | 410 | 1.30E-114 | ||
| PANTHER | 498 | 1030 | 533 | 0 | – | |
| PANTHER | 498 | 1030 | 533 | 0 | – | |
| ProSiteProfiles | 672 | 1012 | 341 | 131.577 | ||
| Gene3D | 675 | 1015 | 341 | 1.60E-138 | ||
| SUPERFAMILY | 675 | 1009 | 335 | 4.03E-118 | ||
| ProSiteProfiles | 692 | 727 | 36 | 10.997 | ||
| SMART | 692 | 727 | 36 | 9.80E-06 | ||
| CDD | 693 | 1008 | 316 | 3.12E-173 | ||
| Pfam | 693 | 719 | 27 | 1.70E-05 | ||
| SMART | 728 | 763 | 36 | 6.60E-07 | ||
| ProSiteProfiles | 728 | 763 | 36 | 10.46 | ||
| Pfam | 731 | 760 | 30 | 8.00E-08 | ||
| ProSiteProfiles | 764 | 799 | 36 | 10.39 | ||
| SMART | 764 | 799 | 36 | 2.40E-06 | ||
| Pfam | 766 | 797 | 32 | 1.40E-05 | ||
| ProSiteProfiles | 800 | 835 | 36 | 10.157 | ||
| SMART | 800 | 835 | 36 | 1.30E-07 | ||
| Pfam | 802 | 832 | 31 | 9.00E-06 | ||
| SMART | 836 | 872 | 37 | 5.90E-07 | ||
| ProSiteProfiles | 836 | 872 | 37 | 10.764 | ||
| Pfam | 838 | 870 | 33 | 2.30E-08 | ||
| ProSiteProfiles | 873 | 908 | 36 | 12 | ||
| SMART | 873 | 908 | 36 | 1.30E-06 | ||
| Pfam | 874 | 904 | 31 | 4.00E-07 | ||
| ProSiteProfiles | 909 | 944 | 36 | 10.04 | ||
| SMART | 909 | 944 | 36 | 6.50E-08 | ||
| Pfam | 910 | 942 | 33 | 3.50E-05 | ||
| ProSiteProfiles | 945 | 986 | 42 | 9.807 | ||
| SMART | 951 | 986 | 36 | 8.60E-07 | ||
| Pfam | 959 | 985 | 27 | 7.70E-07 | ||
| ProSiteProfiles | 987 | 1023 | 37 | 4.674 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj0g3v0047679.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0047679.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.