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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0048609 |
| Transcript ID | Lj0g3v0048609.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like [Fragaria vesca subsp]. vesca] gi|470113906|ref|XP_004293160.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 16 | 16 | 5 | – | |
| PANTHER | 63 | 346 | 284 | 6.90E-276 | – | |
| ProSiteProfiles | 74 | 108 | 35 | 8.67 | ||
| Pfam | 79 | 104 | 26 | 0.05 | ||
| ProSiteProfiles | 142 | 176 | 35 | 7.158 | ||
| ProSiteProfiles | 178 | 208 | 31 | 5.842 | ||
| ProSiteProfiles | 211 | 245 | 35 | 10.742 | ||
| Pfam | 212 | 249 | 38 | 3.70E-07 | ||
| Gene3D | 212 | 242 | 31 | 8.70E-13 | ||
| TIGRFAM | 214 | 246 | 33 | 2.00E-06 | ||
| ProSiteProfiles | 246 | 280 | 35 | 6.369 | ||
| ProSiteProfiles | 281 | 310 | 30 | 5.031 | ||
| Gene3D | 309 | 363 | 55 | 8.70E-13 | ||
| Pfam | 310 | 350 | 41 | 2.10E-09 | ||
| ProSiteProfiles | 311 | 345 | 35 | 11.575 | ||
| TIGRFAM | 313 | 347 | 35 | 6.40E-08 | ||
| ProSiteProfiles | 381 | 411 | 31 | 7.092 | ||
| PANTHER | 382 | 691 | 310 | 6.90E-276 | – | |
| Pfam | 412 | 459 | 48 | 1.90E-08 | ||
| ProSiteProfiles | 412 | 446 | 35 | 10.6 | ||
| TIGRFAM | 414 | 447 | 34 | 1.40E-04 | ||
| ProSiteProfiles | 482 | 512 | 31 | 8.1 | ||
| Gene3D | 485 | 533 | 49 | 8.70E-13 | ||
| Pfam | 487 | 512 | 26 | 0.0024 | ||
| TIGRFAM | 487 | 512 | 26 | 0.0011 | ||
| ProSiteProfiles | 513 | 547 | 35 | 10.457 | ||
| Pfam | 515 | 560 | 46 | 1.10E-10 | ||
| TIGRFAM | 516 | 549 | 34 | 1.10E-06 | ||
| ProSiteProfiles | 548 | 578 | 31 | 9.525 | ||
| TIGRFAM | 551 | 578 | 28 | 3.30E-04 | ||
| ProSiteProfiles | 584 | 618 | 35 | 8.374 | ||
| Pfam | 586 | 612 | 27 | 0.0022 | ||
| TIGRFAM | 587 | 612 | 26 | 0.0018 | ||
| Gene3D | 592 | 669 | 78 | 8.70E-13 | ||
| ProSiteProfiles | 650 | 684 | 35 | 6.401 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0048609.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0048609.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.