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Lj0g3v0049279.1

Overview

Field Value
Gene ID Lj0g3v0049279
Transcript ID Lj0g3v0049279.1
Lotus japonicus genome version MG20 v3.0
Description RecName: Full=60S ribosomal protein L30gi|2879811|emb|CAA11256.1| ribosomal protein L30 [Lupinus luteus] gi|6094048|sp|O49884.1|RL30_LUPLU
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11449:SF2
2 112 111 3.70E-95 –
PANTHER
PTHR11449
2 112 111 3.70E-95
IPR000231
Gene3D
G3DSA:3.30.1330.30
6 107 102 1.30E-52
IPR029064
Hamap
MF_00481
12 109 98 21.148
IPR000231
Pfam
PF01248
13 105 93 3.60E-24
IPR004038
SUPERFAMILY
SSF55315
13 106 94 9.97E-35
IPR029064
ProSitePatterns
PS00709
24 48 25 –
IPR022991
ProSitePatterns
PS00993
80 100 21 –
IPR022991

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0022625
Cellular component Cytosolic large ribosomal subunit The large subunit of a ribosome located in the cytosol.
Subterm of
Part of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj0g3v0049279.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0049279.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.