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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0058699 |
| Transcript ID | Lj0g3v0058699.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Glycine max] gi|356569756|ref|XP_003553062.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 12 | 46 | 35 | 5.514 | ||
| Gene3D | 16 | 64 | 49 | 3.90E-05 | ||
| ProSiteProfiles | 47 | 77 | 31 | 5.733 | ||
| PANTHER | 61 | 210 | 150 | 3.20E-299 | – | |
| PANTHER | 61 | 210 | 150 | 3.20E-299 | – | |
| ProSiteProfiles | 79 | 113 | 35 | 5.546 | ||
| ProSiteProfiles | 114 | 148 | 35 | 9.493 | ||
| Pfam | 116 | 144 | 29 | 0.037 | ||
| Pfam | 148 | 197 | 50 | 3.30E-15 | ||
| ProSiteProfiles | 149 | 183 | 35 | 12.134 | ||
| TIGRFAM | 151 | 185 | 35 | 2.30E-09 | ||
| Gene3D | 152 | 185 | 34 | 3.90E-05 | ||
| ProSiteProfiles | 184 | 218 | 35 | 10.6 | ||
| TIGRFAM | 187 | 216 | 30 | 0.0019 | ||
| ProSiteProfiles | 284 | 318 | 35 | 6.259 | ||
| ProSiteProfiles | 319 | 354 | 36 | 5.075 | ||
| PANTHER | 347 | 431 | 85 | 3.20E-299 | – | |
| PANTHER | 347 | 431 | 85 | 3.20E-299 | – | |
| ProSiteProfiles | 355 | 389 | 35 | 9.734 | ||
| Pfam | 358 | 386 | 29 | 0.016 | ||
| ProSiteProfiles | 390 | 424 | 35 | 5.821 | ||
| ProSiteProfiles | 425 | 455 | 31 | 5.36 | ||
| ProSiteProfiles | 494 | 528 | 35 | 11.509 | ||
| TIGRFAM | 498 | 526 | 29 | 6.20E-06 | ||
| Pfam | 498 | 525 | 28 | 9.40E-05 | ||
| Gene3D | 530 | 600 | 71 | 3.90E-05 | ||
| ProSiteProfiles | 564 | 598 | 35 | 9.229 | ||
| TIGRFAM | 568 | 599 | 32 | 1.20E-06 | ||
| Pfam | 570 | 596 | 27 | 0.0048 | ||
| PANTHER | 571 | 619 | 49 | 3.20E-299 | – | |
| PANTHER | 571 | 619 | 49 | 3.20E-299 | – | |
| ProSiteProfiles | 599 | 633 | 35 | 6.456 | ||
| PANTHER | 668 | 698 | 31 | 3.20E-299 | – | |
| PANTHER | 668 | 698 | 31 | 3.20E-299 | – | |
| ProSiteProfiles | 669 | 703 | 35 | 6.873 | ||
| ProSiteProfiles | 704 | 738 | 35 | 7.574 | ||
| PANTHER | 734 | 955 | 222 | 3.20E-299 | – | |
| PANTHER | 734 | 955 | 222 | 3.20E-299 | – | |
| ProSiteProfiles | 739 | 773 | 35 | 6.807 | ||
| ProSiteProfiles | 774 | 808 | 35 | 9.646 | ||
| Gene3D | 775 | 839 | 65 | 3.90E-05 | ||
| TIGRFAM | 778 | 809 | 32 | 9.50E-04 | ||
| Pfam | 779 | 804 | 26 | 0.15 | ||
| Pfam | 806 | 836 | 31 | 4.90E-06 | ||
| ProSiteProfiles | 809 | 843 | 35 | 9.986 | ||
| TIGRFAM | 813 | 840 | 28 | 0.0018 | ||
| ProSiteProfiles | 844 | 878 | 35 | 9.931 | ||
| TIGRFAM | 847 | 878 | 32 | 0.0018 | ||
| Pfam | 847 | 874 | 28 | 0.024 | ||
| ProSiteProfiles | 879 | 913 | 35 | 8.177 | ||
| ProSiteProfiles | 914 | 948 | 35 | 8.747 | ||
| Pfam | 917 | 945 | 29 | 0.83 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0058699.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0058699.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.