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Lj0g3v0060759.1

Overview

Field Value
Gene ID Lj0g3v0060759
Transcript ID Lj0g3v0060759.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like isoform X2 [Cicer arietinum] gi|502081287|ref|XP_004486821.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 52 52 – –
PANTHER
PTHR24031
5 477 473 5.40E-291 –
PANTHER
PTHR24031:SF219
5 477 473 5.40E-291 –
Gene3D
G3DSA:3.40.50.300
84 319 236 2.90E-93
IPR027417
ProSiteProfiles
PS51195
99 127 29 11.752
IPR014014
CDD
cd00268
101 305 205 8.93E-106 –
SMART
SM00487
118 321 204 2.50E-69
IPR014001
Pfam
PF00270
123 294 172 1.60E-49
IPR011545
ProSiteProfiles
PS51192
130 305 176 33.402
IPR014001
SUPERFAMILY
SSF52540
171 455 285 6.67E-78
IPR027417
ProSitePatterns
PS00039
251 259 9 –
IPR000629
CDD
cd00079
318 447 130 5.75E-44 –
Gene3D
G3DSA:3.40.50.300
320 476 157 3.30E-60
IPR027417
Pfam
PF00271
330 439 110 7.40E-30
IPR001650
ProSiteProfiles
PS51194
333 478 146 23.874
IPR001650
SMART
SM00490
358 439 82 4.30E-34
IPR001650
MobiDBLite
mobidb-lite
473 503 31 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj0g3v0060759.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0060759.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.