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Lj0g3v0072459.1

Overview

Field Value
Gene ID Lj0g3v0072459
Transcript ID Lj0g3v0072459.1
Lotus japonicus genome version MG20 v3.0
Description Photosystem I P700 chlorophyll a apoprotein [Medicago truncatula] gi|357463453|ref|XP_003602008.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315:SF66
1 188 188 1.40E-104 –
PANTHER
PTHR23315
1 188 188 1.40E-104 –
Gene3D
G3DSA:1.25.10.10
20 234 215 1.90E-31
IPR011989
CDD
cd00020
53 171 119 2.33E-04 –
SUPERFAMILY
SSF48371
74 248 175 2.13E-26
IPR016024
SMART
SM00185
91 130 40 280
IPR000225
SMART
SM00185
132 172 41 0.011
IPR000225
Pfam
PF00514
132 172 41 1.70E-06
IPR000225
CDD
cd00020
142 248 107 7.56E-10 –
ProSiteProfiles
PS50176
143 185 43 9.607
IPR000225
SMART
SM00185
174 214 41 4.1
IPR000225
SUPERFAMILY
SSF48371
223 518 296 8.90E-21
IPR016024
Gene3D
G3DSA:1.25.10.10
235 516 282 2.10E-19
IPR011989
CDD
cd00020
313 417 105 3.13E-04 –
SMART
SM00185
340 378 39 77
IPR000225
SMART
SM00185
424 466 43 190
IPR000225

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj0g3v0072459.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0072459.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.