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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0075159 |
| Transcript ID | Lj0g3v0075159.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Zn/Cd P(IB)-type ATPase [Medicago truncatula] gi|357479567|ref|XP_003610069.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 305 | 305 | 2.20E-98 | – | |
| PANTHER | 1 | 305 | 305 | 2.20E-98 | – | |
| Phobius | 1 | 258 | 258 | – | – | |
| SUPERFAMILY | 2 | 20 | 19 | 6.70E-46 | ||
| Pfam | 2 | 216 | 215 | 4.30E-36 | – | |
| TIGRFAM | 2 | 280 | 279 | 2.40E-37 | ||
| PRINTS | 2 | 16 | 15 | 3.00E-17 | – | |
| ProSitePatterns | 4 | 10 | 7 | – | ||
| Gene3D | 16 | 128 | 113 | 3.50E-07 | ||
| SUPERFAMILY | 62 | 303 | 242 | 6.70E-46 | ||
| Gene3D | 129 | 272 | 144 | 7.90E-35 | ||
| PRINTS | 148 | 158 | 11 | 3.00E-17 | – | |
| PRINTS | 202 | 221 | 20 | 3.00E-17 | – | |
| ProSitePatterns | 202 | 224 | 23 | – | – | |
| PRINTS | 226 | 238 | 13 | 3.00E-17 | – | |
| TMHMM | 259 | 278 | 20 | – | – | |
| Phobius | 259 | 278 | 20 | – | – | |
| Phobius | 279 | 283 | 5 | – | – | |
| TMHMM | 283 | 305 | 23 | – | – | |
| Phobius | 284 | 306 | 23 | – | – | |
| Phobius | 307 | 668 | 362 | – | – | |
| MobiDBLite | 327 | 369 | 43 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj0g3v0075159.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0075159.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.