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Lj0g3v0076649.1

Overview

Field Value
Gene ID Lj0g3v0076649
Transcript ID Lj0g3v0076649.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: vacuolar protein 8-like [Glycine max] gi|356532060|ref|XP_003534592.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315
92 547 456 1.10E-299 –
PANTHER
PTHR23315:SF97
92 547 456 1.10E-299 –
Gene3D
G3DSA:1.25.10.10
151 534 384 2.80E-62
IPR011989
SUPERFAMILY
SSF48371
153 534 382 2.58E-44
IPR016024
SMART
SM00185
182 222 41 90
IPR000225
CDD
cd00020
195 304 110 3.28E-07 –
ProSiteProfiles
PS50176
234 276 43 9.012
IPR000225
SMART
SM00185
264 304 41 0.46
IPR000225
Pfam
PF00514
268 304 37 6.40E-05
IPR000225
CDD
cd00020
270 385 116 8.14E-12 –
SMART
SM00185
305 346 42 67
IPR000225
SMART
SM00185
347 386 40 9.1
IPR000225
SMART
SM00185
387 426 40 17
IPR000225
CDD
cd00020
391 510 120 3.92E-11 –
SMART
SM00185
427 467 41 0.51
IPR000225
Pfam
PF00514
428 465 38 2.20E-04
IPR000225
SMART
SM00185
468 510 43 27
IPR000225

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj0g3v0076649.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0076649.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.