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Lj0g3v0078389.1

Overview

Field Value
Gene ID Lj0g3v0078389
Transcript ID Lj0g3v0078389.1
Lotus japonicus genome version MG20 v3.0
Description hAT dimerisation domain-containing protein-like [Oryza sativa Japonica Group] gi|55297521|dbj|BAD68478.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 357 357 – –
PANTHER
PTHR32166
14 102 89 3.40E-217 –
ProSiteProfiles
PS50808
14 71 58 9.237
IPR003656
Pfam
PF02892
18 54 37 2.00E-06
IPR003656
PANTHER
PTHR32166
137 445 309 3.40E-217 –
Pfam
PF04937
210 358 149 2.40E-65
IPR007021
SUPERFAMILY
SSF53098
234 468 235 1.21E-26
IPR012337
TMHMM
TMhelix
355 377 23 – –
Phobius
TRANSMEMBRANE
358 378 21 – –
Phobius
CYTOPLASMIC_DOMAIN
379 446 68 – –
Phobius
TRANSMEMBRANE
447 475 29 – –
TMHMM
TMhelix
453 475 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
476 514 39 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj0g3v0078389.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0078389.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.