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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0078539 |
| Transcript ID | Lj0g3v0078539.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like isoform X1 [Cicer arietinum] gi|502153966|ref|XP_004509525.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 76 | 106 | 31 | 5.229 | ||
| PANTHER | 86 | 283 | 198 | 1.20E-258 | – | |
| PANTHER | 86 | 283 | 198 | 1.20E-258 | – | |
| Gene3D | 87 | 341 | 255 | 8.90E-04 | ||
| Pfam | 106 | 138 | 33 | 8.80E-12 | ||
| ProSiteProfiles | 110 | 144 | 35 | 12.342 | ||
| TIGRFAM | 112 | 145 | 34 | 1.70E-08 | ||
| ProSiteProfiles | 145 | 179 | 35 | 13.57 | ||
| Pfam | 145 | 193 | 49 | 3.60E-18 | ||
| TIGRFAM | 147 | 181 | 35 | 2.00E-09 | ||
| ProSiteProfiles | 180 | 214 | 35 | 10.556 | ||
| TIGRFAM | 182 | 216 | 35 | 4.60E-04 | ||
| Pfam | 214 | 263 | 50 | 9.20E-18 | ||
| ProSiteProfiles | 215 | 249 | 35 | 12.934 | ||
| TIGRFAM | 217 | 251 | 35 | 1.20E-08 | ||
| ProSiteProfiles | 250 | 284 | 35 | 11.564 | ||
| TIGRFAM | 252 | 285 | 34 | 2.40E-06 | ||
| ProSiteProfiles | 285 | 319 | 35 | 8.309 | ||
| Pfam | 290 | 317 | 28 | 0.64 | ||
| PANTHER | 319 | 644 | 326 | 1.20E-258 | – | |
| PANTHER | 319 | 644 | 326 | 1.20E-258 | – | |
| ProSiteProfiles | 320 | 354 | 35 | 8.276 | ||
| Pfam | 325 | 351 | 27 | 0.0035 | ||
| ProSiteProfiles | 355 | 389 | 35 | 10.512 | ||
| Pfam | 357 | 386 | 30 | 5.40E-05 | ||
| TIGRFAM | 360 | 390 | 31 | 8.30E-06 | ||
| Pfam | 390 | 437 | 48 | 6.90E-17 | ||
| ProSiteProfiles | 390 | 424 | 35 | 13.493 | ||
| TIGRFAM | 392 | 426 | 35 | 3.90E-10 | ||
| Gene3D | 397 | 630 | 234 | 7.90E-08 | ||
| SUPERFAMILY | 401 | 631 | 231 | 1.31E-07 | – | |
| ProSiteProfiles | 425 | 459 | 35 | 11.751 | ||
| TIGRFAM | 427 | 461 | 35 | 1.10E-05 | ||
| Pfam | 456 | 486 | 31 | 8.00E-08 | ||
| ProSiteProfiles | 460 | 494 | 35 | 11.06 | ||
| TIGRFAM | 462 | 495 | 34 | 1.70E-05 | ||
| ProSiteProfiles | 495 | 529 | 35 | 11.729 | ||
| Pfam | 496 | 542 | 47 | 1.60E-13 | ||
| TIGRFAM | 497 | 531 | 35 | 3.00E-07 | ||
| ProSiteProfiles | 530 | 564 | 35 | 12.825 | ||
| TIGRFAM | 533 | 566 | 34 | 4.00E-10 | ||
| Pfam | 564 | 613 | 50 | 2.70E-17 | ||
| ProSiteProfiles | 565 | 599 | 35 | 11.937 | ||
| TIGRFAM | 567 | 600 | 34 | 3.40E-08 | ||
| ProSiteProfiles | 600 | 634 | 35 | 13.592 | ||
| TIGRFAM | 602 | 636 | 35 | 2.00E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0078539.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0078539.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.