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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0078579 |
| Transcript ID | Lj0g3v0078579.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Glycine max] gi|356540339|ref|XP_003538647.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | – | – | |
| PANTHER | 11 | 328 | 318 | 0 | – | |
| PANTHER | 11 | 328 | 318 | 0 | – | |
| ProSiteProfiles | 90 | 125 | 36 | 8.659 | ||
| TIGRFAM | 93 | 126 | 34 | 6.70E-04 | ||
| Pfam | 93 | 118 | 26 | 0.0091 | ||
| ProSiteProfiles | 126 | 160 | 35 | 6.719 | ||
| ProSiteProfiles | 161 | 191 | 31 | 7.761 | ||
| Pfam | 192 | 240 | 49 | 3.30E-12 | ||
| ProSiteProfiles | 192 | 226 | 35 | 11.816 | ||
| TIGRFAM | 194 | 227 | 34 | 2.10E-07 | ||
| ProSiteProfiles | 227 | 261 | 35 | 7.235 | ||
| ProSiteProfiles | 262 | 292 | 31 | 7.235 | ||
| SUPERFAMILY | 264 | 421 | 158 | 6.64E-05 | ||
| Pfam | 266 | 293 | 28 | 0.25 | ||
| Gene3D | 267 | 289 | 23 | 2.00E-07 | ||
| ProSiteProfiles | 293 | 327 | 35 | 10.38 | ||
| TIGRFAM | 295 | 328 | 34 | 9.40E-05 | ||
| Pfam | 295 | 322 | 28 | 4.50E-04 | ||
| ProSiteProfiles | 328 | 362 | 35 | 5.678 | ||
| ProSiteProfiles | 363 | 393 | 31 | 6.489 | ||
| Pfam | 368 | 392 | 25 | 0.075 | ||
| Pfam | 394 | 425 | 32 | 6.90E-09 | ||
| ProSiteProfiles | 394 | 428 | 35 | 12.101 | ||
| PANTHER | 395 | 704 | 310 | 0 | – | |
| PANTHER | 395 | 704 | 310 | 0 | – | |
| TIGRFAM | 396 | 427 | 32 | 2.30E-08 | ||
| TIGRFAM | 427 | 457 | 31 | 5.00E-08 | ||
| Pfam | 427 | 457 | 31 | 1.50E-07 | ||
| ProSiteProfiles | 429 | 459 | 31 | 7.574 | ||
| ProSiteProfiles | 460 | 494 | 35 | 5.722 | ||
| Gene3D | 485 | 569 | 85 | 2.00E-07 | ||
| ProSiteProfiles | 495 | 525 | 31 | 7.355 | ||
| Pfam | 526 | 573 | 48 | 3.40E-08 | ||
| ProSiteProfiles | 526 | 560 | 35 | 10.698 | ||
| TIGRFAM | 529 | 561 | 33 | 6.40E-05 | ||
| ProSiteProfiles | 561 | 591 | 31 | 8.035 | ||
| ProSiteProfiles | 597 | 627 | 31 | 7.837 | ||
| Pfam | 599 | 625 | 27 | 1.50E-04 | ||
| TIGRFAM | 600 | 624 | 25 | 5.50E-04 | ||
| Gene3D | 637 | 682 | 46 | 2.00E-07 | ||
| ProSiteProfiles | 663 | 697 | 35 | 6.16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0078579.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0078579.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.