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Lj0g3v0080719.1

Overview

Field Value
Gene ID Lj0g3v0080719
Transcript ID Lj0g3v0080719.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: dnaJ homolog subfamily B member 13-like [Glycine max] gi|356500637|ref|XP_003519138.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 62 62 – –
MobiDBLite
mobidb-lite
1 22 22 – –
Pfam
PF01556
34 226 193 1.70E-37
IPR002939
Gene3D
G3DSA:2.60.260.20
34 60 27 2.20E-19 –
SUPERFAMILY
SSF49493
35 62 28 1.23E-10
IPR008971
CDD
cd10747
35 229 195 8.80E-41 –
PANTHER
PTHR24078
35 241 207 8.70E-75 –
PANTHER
PTHR24078:SF317
35 241 207 8.70E-75 –
TMHMM
TMhelix
60 82 23 – –
Phobius
TRANSMEMBRANE
63 96 34 – –
Phobius
CYTOPLASMIC_DOMAIN
97 246 150 – –
Gene3D
G3DSA:2.60.260.20
101 146 46 2.20E-19 –
SUPERFAMILY
SSF49493
105 147 43 1.23E-10
IPR008971
Gene3D
G3DSA:2.60.260.20
147 226 80 1.30E-26 –
SUPERFAMILY
SSF49493
149 236 88 9.03E-25
IPR008971

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0080719.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0080719.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.