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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002939
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 72 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.988s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0080719.1
n.a. PREDICTED: dnaJ homolog subfamily B member 13-like [Glycine max] gi|356500637|ref|XP_003519138.1| chr0 31353298 31354957 +
2 domain predictions
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Lj0g3v0116049.1
n.a. PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Glycine max] gi|356557132|ref|XP_003546872.1| chr0 51009482 51010356 +
2 domain predictions
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Lj0g3v0129039.1
n.a. PREDICTED: dnaJ homolog subfamily B member 1-like [Cicer arietinum] gi|502147355|ref|XP_004506751.1| chr0 58341057 58345031 -
2 domain predictions
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Lj0g3v0203169.1
n.a. PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Glycine max] gi|356528564|ref|XP_003532871.1| chr0 100659458 100666752 +
2 domain predictions
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Lj0g3v0203169.2
n.a. PREDICTED: chaperone protein DnaJ-like isoform X3 [Cicer arietinum] gi|502170881|ref|XP_004514938.1| chr0 100660907 100666752 +
2 domain predictions
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Lj0g3v0203169.3
n.a. PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Glycine max] gi|356542391|ref|XP_003539650.1| chr0 100661504 100666752 +
2 domain predictions
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Lj0g3v0211709.1
n.a. Chaperone protein dnaJ [Medicago truncatula] gi|357474457|ref|XP_003607513.1| chr0 106692876 106696291 +
2 domain predictions
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Lj0g3v0240719.1
n.a. PREDICTED: dnaJ homolog subfamily B member 13-like [Glycine max] gi|356500637|ref|XP_003519138.1| chr0 124948504 124948911 +
2 domain predictions
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Lj0g3v0241359.1
n.a. DnaJ [Medicago truncatula] gi|357453281|ref|XP_003596917.1| chr0 125184487 125186143 -
2 domain predictions
 –
Lj0g3v0241359.2
n.a. seed maturation protein PM37 [Glycine max] gi|351724545|ref|NP_001238341.1| chr0 125184487 125186143 -
2 domain predictions
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Lj0g3v0267619.3
n.a. PREDICTED: chaperone protein DnaJ-like [Glycine max] gi|356522869|ref|XP_003530065.1| chr0 138657893 138665320 -
2 domain predictions
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Lj0g3v0267619.4
n.a. PREDICTED: chaperone protein DnaJ-like [Glycine max] gi|356522869|ref|XP_003530065.1| chr0 138657893 138665320 -
2 domain predictions
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Lj0g3v0289749.1
n.a. DnaJ homolog subfamily B member 13 [Triticum urartu] gi|474389126|gb|EMS65162.1| chr0 150449403 150451314 +
2 domain predictions
 –
Lj1g3v0246820.1
n.a. PREDICTED: chaperone protein dnaJ 1, mitochondrial-like isoform X2 [Cicer arietinum] gi|502095201|ref|XP_004490397.1| chr1 2517449 2527795 +
2 domain predictions
 –
Lj1g3v0246820.2
n.a. PREDICTED: chaperone protein dnaJ 1, mitochondrial-like isoform X3 [Cicer arietinum] gi|502095205|ref|XP_004490398.1| chr1 2517521 2525952 +
2 domain predictions
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Lj1g3v0450120.1
n.a. PREDICTED: dnaJ homolog subfamily B member 1-like [Glycine max] gi|356508606|ref|XP_003523046.1| chr1 6047702 6051252 +
2 domain predictions
 –
Lj1g3v1931380.1
n.a. DnaJ homolog subfamily B member [Medicago truncatula] gi|357466371|ref|XP_003603470.1| chr1 22968213 22969504 -
2 domain predictions
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Lj1g3v2326700.1
n.a. PREDICTED: dnaJ homolog subfamily B member 13-like [Solanum lycopersicum] gi|460402522|ref|XP_004246761.1| chr1 27553007 27556575 +
2 domain predictions
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Lj1g3v4863040.1
n.a. PREDICTED: dnaJ homolog subfamily B member 11-like [Glycine max] gi|356505618|ref|XP_003521587.1| chr1 58898238 58903101 -
2 domain predictions
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Lj1g3v4863040.2
n.a. PREDICTED: dnaJ homolog subfamily B member 11-like [Glycine max] gi|356505618|ref|XP_003521587.1| chr1 58899208 58903101 -
2 domain predictions
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Lj2g3v1349370.1
n.a. PREDICTED: dnaJ homolog subfamily B member 13-like [Cicer arietinum] gi|502093496|ref|XP_004489963.1| chr2 21233048 21234938 -
2 domain predictions
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Lj2g3v1729140.1
n.a. TO24-123rc [Taraxacum officinale] gi|75755829|gb|ABA26974.1| chr2 26647310 26649109 +
2 domain predictions
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Lj3g3v0044290.1
n.a. PREDICTED: chaperone protein DnaJ-like isoform X1 [Cicer arietinum] gi|502080714|ref|XP_004486655.1| chr3 558815 564922 -
2 domain predictions
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Lj3g3v0509890.1
n.a. PREDICTED: chaperone protein dnaJ 2-like [Glycine max] gi|356504601|ref|XP_003521084.1| chr3 5871279 5875216 -
2 domain predictions
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Lj3g3v0881630.1
n.a. PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Glycine max] gi|356542391|ref|XP_003539650.1| chr3 10716010 10721467 -
2 domain predictions
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Lj3g3v1295690.1
n.a. seed maturation protein PM37 [Glycine max] gi|351724545|ref|NP_001238341.1| chr3 16546193 16548302 +
2 domain predictions
 –
Lj3g3v1295700.1
n.a. n.a. chr3 16546193 16549521 -
2 domain predictions
 –
Lj3g3v2823230.1
n.a. PREDICTED: dnaJ homolog subfamily B member 13-like isoform 1 [Glycine max] gi|356517478|ref|XP_003527414.1| chr3 34722020 34725826 +
2 domain predictions
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Lj3g3v2927370.1
n.a. seed maturation protein PM37 [Glycine max] gi|351724545|ref|NP_001238341.1| chr3 36588755 36589914 -
2 domain predictions
 –
Lj3g3v2927380.1
n.a. seed maturation protein PM37 [Glycine max] gi|351724545|ref|NP_001238341.1| chr3 36588805 36591201 -
2 domain predictions
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Lj3g3v2927380.2
n.a. seed maturation protein PM37 [Glycine max] gi|351724545|ref|NP_001238341.1| chr3 36590403 36591201 -
2 domain predictions
 –
Lj6g3v2006700.1
n.a. PREDICTED: dnaJ homolog subfamily B member 4-like [Cicer arietinum] gi|502078082|ref|XP_004485834.1| chr6 23610211 23612505 -
2 domain predictions
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Lj6g3v2006710.1
n.a. PREDICTED: dnaJ homolog subfamily B member 4-like [Cicer arietinum] gi|502078082|ref|XP_004485834.1| chr6 23610336 23616427 -
2 domain predictions
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Lj6g3v2006720.1
n.a. DnaJ homolog subfamily B member [Medicago truncatula] gi|357446733|ref|XP_003593642.1| chr6 23617521 23619832 -
2 domain predictions
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LotjaGi1g1v0140500.1
n.a. Chaperone protein DNAj, putative; TAIR: AT1G28210.1 DNAJ heat shock family protein; Swiss-Prot: sp|Q38813|DNAJ1_ARATH Chaperone protein dnaJ 1, mitochondrial; TrEMBL-Plants: tr|K7K9W1|K7K9W1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0140500 LjG1.1_chr1 23051807 23069361 +
2 domain predictions
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LotjaGi1g1v0140500.2
n.a. Chaperone protein DNAj, putative; TAIR: AT1G28210.2 DNAJ heat shock family protein; Swiss-Prot: sp|Q38813|DNAJ1_ARATH Chaperone protein dnaJ 1, mitochondrial; TrEMBL-Plants: tr|K7K9W1|K7K9W1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0140500 LjG1.1_chr1 23051826 23068758 +
2 domain predictions
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LotjaGi1g1v0140500.3
n.a. Chaperone protein DNAj, putative; TAIR: AT1G28210.1 DNAJ heat shock family protein; Swiss-Prot: sp|Q38813|DNAJ1_ARATH Chaperone protein dnaJ 1, mitochondrial; TrEMBL-Plants: tr|K7M7R2|K7M7R2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0140500 LjG1.1_chr1 23051839 23068667 +
2 domain predictions
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LotjaGi1g1v0214200.1
n.a. Chaperone protein dnaJ, putative; TAIR: AT3G47940.1 DNAJ heat shock family protein; Swiss-Prot: sp|Q80Y75|DJB13_MOUSE DnaJ homolog subfamily B member 13; TrEMBL-Plants: tr|V7CHS3|V7CHS3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0214200 LjG1.1_chr1 47228024 47232131 +
2 domain predictions
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LotjaGi1g1v0261600.1
n.a. Chaperone protein dnaJ; TAIR: AT1G11040.1 HSP40/DnaJ peptide-binding protein; Swiss-Prot: sp|Q80Y75|DJB13_MOUSE DnaJ homolog subfamily B member 13; TrEMBL-Plants: tr|G7J4X9|G7J4X9_MEDTR DnaJ chaperone carboxy-terminal domain protein; Found in the gene: LotjaGi1g1v0261600 LjG1.1_chr1 64088827 64091741 +
2 domain predictions
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LotjaGi1g1v0389700.1
n.a. Chaperone protein dnaJ; TAIR: AT5G25530.2 DNAJ heat shock family protein; Swiss-Prot: sp|Q9UDY4|DNJB4_HUMAN DnaJ homolog subfamily B member 4; TrEMBL-Plants: tr|I1K906|I1K906_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0389700 LjG1.1_chr1 87307732 87310395 -
2 domain predictions
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LotjaGi1g1v0441600.1
n.a. Chaperone protein dnaJ; TAIR: AT5G01390.1 DNAJ heat shock family protein; Swiss-Prot: sp|Q80Y75|DJB13_MOUSE DnaJ homolog subfamily B member 13; TrEMBL-Plants: tr|V7AJV6|V7AJV6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0441600 LjG1.1_chr1 93839234 93844157 +
2 domain predictions
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LotjaGi1g1v0761200.1
n.a. Chaperone protein dnaJ, putative; TAIR: AT3G62600.1 DNAJ heat shock family protein; Swiss-Prot: sp|Q9LZK5|DNJ19_ARATH DnaJ protein ERDJ3B; TrEMBL-Plants: tr|I1JQQ6|I1JQQ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0761200 LjG1.1_chr1 133418453 133423473 -
2 domain predictions
 –
LotjaGi2g1v0114200.1
n.a. Chaperone protein dnaJ; TAIR: AT2G22360.1 DNAJ heat shock family protein; Swiss-Prot: sp|Q9SJZ7|DNJA6_ARATH Chaperone protein dnaJ A6, chloroplastic; TrEMBL-Plants: tr|I1KT02|I1KT02_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0114200 LjG1.1_chr2 42191565 42204252 +
2 domain predictions
 –
LotjaGi2g1v0114200.2
n.a. Chaperone protein dnaJ; TAIR: AT2G22360.1 DNAJ heat shock family protein; Swiss-Prot: sp|Q9SJZ7|DNJA6_ARATH Chaperone protein dnaJ A6, chloroplastic; TrEMBL-Plants: tr|I1KT02|I1KT02_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0114200 LjG1.1_chr2 42191685 42204262 +
2 domain predictions
 –
LotjaGi2g1v0114200.3
n.a. Chaperone protein dnaJ; TAIR: AT2G22360.1 DNAJ heat shock family protein; Swiss-Prot: sp|Q9SJZ7|DNJA6_ARATH Chaperone protein dnaJ A6, chloroplastic; TrEMBL-Plants: tr|I1KT02|I1KT02_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0114200 LjG1.1_chr2 42191738 42204193 +
2 domain predictions
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LotjaGi2g1v0193500.1
n.a. Chaperone protein dnaJ, putative; TAIR: AT5G22060.1 DNAJ homologue 2; Swiss-Prot: sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2; TrEMBL-Plants: tr|A0A0D2PQJ2|A0A0D2PQJ2_GOSRA Uncharacterized protein; Found in the gene: LotjaGi2g1v0193500 LjG1.1_chr2 62598955 62600224 +
2 domain predictions
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LotjaGi2g1v0194000.1
n.a. Chaperone protein DnaJ; TAIR: AT3G17830.1 Molecular chaperone Hsp40/DnaJ family protein; Swiss-Prot: sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ; TrEMBL-Plants: tr|I1KJ68|I1KJ68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0194000 LjG1.1_chr2 62704247 62711714 +
2 domain predictions
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LotjaGi2g1v0194000.2
n.a. Chaperone protein DnaJ; TAIR: AT3G17830.1 Molecular chaperone Hsp40/DnaJ family protein; Swiss-Prot: sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ; TrEMBL-Plants: tr|I1KJ68|I1KJ68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0194000 LjG1.1_chr2 62704353 62711706 +
2 domain predictions
 –
LotjaGi3g1v0008000.1
n.a. Chaperone protein dnaJ; TAIR: AT1G80030.1 Molecular chaperone Hsp40/DnaJ family protein; Swiss-Prot: sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ; TrEMBL-Plants: tr|A0A0B2SH79|A0A0B2SH79_GLYSO Chaperone protein DnaJ; Found in the gene: LotjaGi3g1v0008000 LjG1.1_chr3 907883 914459 -
2 domain predictions
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LotjaGi3g1v0058000.1
n.a. Chaperone protein DNAj, putative; TAIR: AT5G48030.1 gametophytic factor 2; Swiss-Prot: sp|Q8GWW8|GFA2_ARATH Chaperone protein dnaJ GFA2, mitochondrial; TrEMBL-Plants: tr|A0A151RE69|A0A151RE69_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058000 LjG1.1_chr3 6031817 6048589 +
2 domain predictions
 –