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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0088099 |
| Transcript ID | Lj0g3v0088099.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | – | – | |
| Phobius | 1 | 6 | 6 | – | – | |
| SignalP | 1 | 23 | 23 | – | – | |
| Phobius | 7 | 17 | 11 | – | – | |
| Phobius | 18 | 22 | 5 | – | – | |
| Phobius | 23 | 551 | 529 | – | – | |
| PANTHER | 29 | 550 | 522 | 7.90E-268 | – | |
| PANTHER | 29 | 550 | 522 | 7.90E-268 | – | |
| SUPERFAMILY | 42 | 128 | 87 | 1.96E-07 | – | |
| Gene3D | 45 | 60 | 16 | 1.00E-07 | ||
| ProSiteProfiles | 61 | 95 | 35 | 6.511 | ||
| Pfam | 96 | 143 | 48 | 5.40E-13 | ||
| ProSiteProfiles | 96 | 130 | 35 | 10.479 | ||
| Gene3D | 97 | 183 | 87 | 1.00E-07 | ||
| TIGRFAM | 98 | 132 | 35 | 3.00E-04 | ||
| ProSiteProfiles | 131 | 165 | 35 | 10.205 | ||
| TIGRFAM | 133 | 166 | 34 | 5.50E-05 | ||
| Pfam | 162 | 191 | 30 | 2.10E-06 | ||
| ProSiteProfiles | 166 | 200 | 35 | 10.238 | ||
| TIGRFAM | 168 | 194 | 27 | 0.001 | ||
| Pfam | 198 | 229 | 32 | 4.10E-11 | ||
| ProSiteProfiles | 201 | 235 | 35 | 11.619 | ||
| TIGRFAM | 203 | 237 | 35 | 2.20E-08 | ||
| SUPERFAMILY | 235 | 338 | 104 | 1.96E-07 | – | |
| Pfam | 235 | 284 | 50 | 2.10E-18 | ||
| ProSiteProfiles | 236 | 270 | 35 | 12.266 | ||
| TIGRFAM | 238 | 272 | 35 | 1.90E-07 | ||
| Gene3D | 239 | 291 | 53 | 1.00E-07 | ||
| ProSiteProfiles | 271 | 305 | 35 | 13.274 | ||
| TIGRFAM | 273 | 305 | 33 | 1.80E-09 | ||
| ProSiteProfiles | 306 | 340 | 35 | 10.15 | ||
| Pfam | 306 | 354 | 49 | 3.50E-14 | ||
| TIGRFAM | 308 | 342 | 35 | 5.30E-07 | ||
| ProSiteProfiles | 341 | 375 | 35 | 11.586 | ||
| TIGRFAM | 344 | 377 | 34 | 2.70E-07 | ||
| Gene3D | 368 | 369 | 2 | 1.00E-07 | ||
| Pfam | 375 | 424 | 50 | 1.40E-16 | ||
| ProSiteProfiles | 376 | 410 | 35 | 11.948 | ||
| TIGRFAM | 378 | 407 | 30 | 2.60E-08 | ||
| Gene3D | 409 | 505 | 97 | 1.00E-07 | ||
| ProSiteProfiles | 411 | 445 | 35 | 11.619 | ||
| TIGRFAM | 413 | 447 | 35 | 1.60E-07 | ||
| Pfam | 442 | 471 | 30 | 3.90E-10 | ||
| ProSiteProfiles | 446 | 480 | 35 | 11.608 | ||
| TIGRFAM | 449 | 480 | 32 | 3.10E-05 | ||
| ProSiteProfiles | 481 | 515 | 35 | 12.923 | ||
| Pfam | 482 | 527 | 46 | 5.40E-14 | ||
| TIGRFAM | 484 | 517 | 34 | 1.30E-10 | ||
| ProSiteProfiles | 516 | 550 | 35 | 9.098 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0088099.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0088099.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.