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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0090229 |
| Transcript ID | Lj0g3v0090229.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g25580-like [Glycine max] gi|356510940|ref|XP_003524191.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | – | – | |
| PANTHER | 30 | 256 | 227 | 2.30E-150 | – | |
| PANTHER | 30 | 256 | 227 | 2.30E-150 | – | |
| Pfam | 32 | 53 | 22 | 0.074 | ||
| ProSiteProfiles | 32 | 58 | 27 | 5.075 | ||
| Gene3D | 37 | 188 | 152 | 2.50E-05 | ||
| ProSiteProfiles | 59 | 89 | 31 | 5.349 | ||
| ProSiteProfiles | 94 | 128 | 35 | 10.49 | ||
| Pfam | 96 | 125 | 30 | 6.50E-04 | ||
| TIGRFAM | 97 | 125 | 29 | 1.80E-04 | ||
| TIGRFAM | 128 | 161 | 34 | 5.00E-04 | ||
| ProSiteProfiles | 129 | 159 | 31 | 6.895 | ||
| Pfam | 148 | 208 | 61 | 0.0013 | ||
| ProSiteProfiles | 160 | 190 | 31 | 6.752 | ||
| ProSiteProfiles | 196 | 226 | 31 | 6.248 | ||
| Gene3D | 226 | 253 | 28 | 2.50E-05 | ||
| Pfam | 286 | 408 | 123 | 2.70E-39 | ||
| PANTHER | 303 | 336 | 34 | 2.30E-150 | – | |
| PANTHER | 303 | 336 | 34 | 2.30E-150 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj0g3v0090229.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0090229.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.