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Lj0g3v0098349.1

Overview

Field Value
Gene ID Lj0g3v0098349
Transcript ID Lj0g3v0098349.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: COP9 signalosome complex subunit 1-like [Glycine max] gi|356505043|ref|XP_003521302.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR14145
1 411 411 4.40E-219 –
PANTHER
PTHR14145:SF2
1 411 411 4.40E-219
IPR033008
Pfam
PF10602
75 249 175 9.50E-58
IPR019585
Coils
Coil
79 110 32 – –
Pfam
PF01399
265 366 102 2.90E-16
IPR000717
SUPERFAMILY
SSF46785
295 375 81 2.31E-11
IPR011991
Gene3D
G3DSA:1.10.10.10
298 374 77 2.20E-08
IPR011991
SMART
SM00753
300 383 84 1.00E-17 –
SMART
SM00088
300 383 84 1.00E-17
IPR000717

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000338
Biological process Protein deneddylation The removal of a ubiquitin-like protein of the NEDD8 type from a protein.
Subterm of
GO:0008180
Cellular component COP9 signalosome A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj0g3v0098349.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0098349.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.